Structure of yeast Ubr1 in complex with Ubc2 and N-degron
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7mex
Q-score: 0.45
Pan M, Zheng Q, Wang T, Liang L, Mao J, Zuo C, Ding R, Ai H, Xie Y, Si D, Yu Y, Liu L, Zhao M
Nature (2021) 600 pp. 334-338 [ Pubmed: 34789879 DOI: doi:10.1038/s41586-021-04097-8 ]
- Yeast ubr1 in complex with ubc2 and n-degron (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin-conjugating enzyme e2 2 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- N-degron (4 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- E3 ubiquitin-protein ligase ubr1 (225 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (8 kDa, Protein from Homo sapiens)
Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7mey
Q-score: 0.407
Pan M, Zheng Q, Wang T, Liang L, Mao J, Zuo C, Ding R, Ai H, Xie Y, Si D, Yu Y, Liu L, Zhao M
Nature (2021) 600 pp. 334-338 [ Pubmed: 34789879 DOI: doi:10.1038/s41586-021-04097-8 ]
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- 2-(ethylamino)ethane-1-thiol (105 Da, Ligand)
- Yeast ubr1 in complex with ubc2 and monoubiquitinated n-degron (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Monoubiquitinated n-degron (4 kDa, Protein from Saccharomyces cerevisiae S288C)
- Zinc ion (65 Da, Ligand)
- E3 ubiquitin-protein ligase ubr1 (225 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin-conjugating enzyme e2 2 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
MicroED structure of orthorhombic Vancomycin at 1.2 A resolution
Resolution: 1.2 Å
EM Method: Electron Crystallography
Fitted PDBs: 7c4u
Q-score: 0.803
Fan Q, Li L, Xue H, Zhou H, Zhao L, Liu J, Mao J, Wu S, Zhang S, Wu C, Li X, Zhou X, Wang J
Angew Chem Int Ed Engl (2020) 59 pp. 15141-15146 [ DOI: doi:10.1002/anie.202003922 Pubmed: 32432368 ]
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Vancomycin (Complex from Amycolatopsis orientalis)
- Vancomycin (1 kDa, Protein from Amycolatopsis orientalis)
MicroED structure of anorthic Vancomycin at 1.05 A resolution
Resolution: 1.05 Å
EM Method: Electron Crystallography
Fitted PDBs: 7c4v
Q-score: 0.676
Fan Q, Li L, Xue H, Zhou H, Zhao L, Liu J, Mao J, Wu S, Zhang S, Wu C, Li X, Zhou X, Wang J
Angew Chem Int Ed Engl (2020) 59 pp. 15141-15146 [ DOI: doi:10.1002/anie.202003922 Pubmed: 32432368 ]
- Water (18 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Vancomycin (Complex from Amycolatopsis orientalis)
- Vancomycin (1 kDa, Protein from Amycolatopsis orientalis)