Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8pnb
Q-score: 0.324
Gil-Cantero D, Mata CP, Valiente L, Rodriguez-Huete A, Valbuena A, Twarock R, Stockley PG, Mateu MG, Caston JR
Commun Biol (2024) 7 pp. 1501-1501 [ DOI: doi:10.1038/s42003-024-07213-2 Pubmed: 39537894 ]
- Rhinovirus b14 (Virus from rhinovirus B14)
- Capsid protein vp2 (27 kDa, Protein from rhinovirus B14)
- Capsid protein vp1 (26 kDa, Protein from rhinovirus B14)
- Genome polyprotein (26 kDa, Protein from rhinovirus B14)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8pnf
Q-score: 0.601
Gil-Cantero D, Mata CP, Valiente L, Rodriguez-Huete A, Valbuena A, Twarock R, Stockley PG, Mateu MG, Caston JR
Commun Biol (2024) 7 pp. 1501-1501 [ DOI: doi:10.1038/s42003-024-07213-2 Pubmed: 39537894 ]
- Capsid protein vp1 (31 kDa, Protein from rhinovirus B14)
- Capsid protein vp3 (26 kDa, Protein from rhinovirus B14)
- Capsid protein vp2 (27 kDa, Protein from rhinovirus B14)
- Capsid protein vp4 (5 kDa, Protein from rhinovirus B14)
- Rna (5'-r(p*ap*up*up*up*up*up*up*up*up*up*up*up*up*u)-3') (4 kDa, RNA from rhinovirus B14)
- Rhinovirus b14 (Virus from rhinovirus B14)
SARS-CoV-2 Spike protein Beta Variant at 4C structural flexibility / heterogeneity analyses
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9gdx
Q-score: 0.285
Herreros D, Mata CP, Noddings C, Irene D, Krieger J, Agard DA, Tsai MD, Sorzano COS, Carazo JM
bioRxiv (2024) [ Pubmed: 39345408 DOI: doi:10.1101/2024.09.16.613176 ]
SARS-CoV-2 Spike protein Beta Variant at 37C structural flexibility / heterogeneity analyses
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9gdy
Q-score: 0.239
Herreros D, Mata CP, Noddings C, Irene D, Krieger J, Agard DA, Tsai MD, Sorzano COS, Carazo JM
bioRxiv (2024) [ Pubmed: 39345408 DOI: doi:10.1101/2024.09.16.613176 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:D614G mutant 1-up
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
- Sars-cov-2 s protein s:d614g mutant (340 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Escherichia virus T4)
SARS-CoV-2 S protein S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7o7l
Q-score: 0.142
Luque D, Goulas T, Mata CP, Mendes SR, Gomis-Ruth FX, Caston JR
PNAS (2022) 119 pp. e2200102119-e2200102119 [ Pubmed: 35500114 DOI: doi:10.1073/pnas.2200102119 ]
- Alpha-2-macroglobulin (163 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Human alpha-2-macroglobulin native i (700 kDa, Complex from Homo sapiens)