Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7kvc
Q-score: 0.305
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 7kvd
Q-score: 0.211
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:D614G mutant 1-up
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
- Sars-cov-2 s protein s:d614g mutant (340 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Escherichia virus T4)
SARS-CoV-2 S protein S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
Platelet integrin from intact cells
Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, de Isidro-Gomez FP, de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O
PNAS (2021) 118 [ DOI: doi:10.1073/pnas.2105004118 Pubmed: 34504018 ]
SARS-CoV-2 spike in prefusion state
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6zow
Q-score: 0.451
Melero R, Sorzano COS, Foster B, Vilas JL, Martinez M, Marabini R, Ramirez-Aportela E, Sanchez-Garcia R, Herreros D, Del Cano L, Losana P, Fonseca-Reyna YC, Conesa P, Wrapp D, Chacon P, McLellan JS, Tagare HD, Carazo JM
IUCrJ (2020) 7 pp. 1059-1069 [ DOI: doi:10.1107/S2052252520012725 Pubmed: 33063791 ]
- Water (18 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Spike homotrimer in prefusion state (Complex from Severe acute respiratory syndrome coronavirus 2)
- Dimethyl sulfoxide (78 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)