Structure of Staphylococcus aureus FloA protein
Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia-Fernandez J, Melero R, Del Campo R, Eulalio A, Mateus A, Lopez-Bravo M, Rico AI, Cava F, Lopez D
Nat Commun (2024) 15 pp. 5583-5583 [ DOI: doi:10.1038/s41467-024-49951-1 Pubmed: 38961085 ]
Structure of the FloA-NfeD complex
Ukleja M, Kricks L, Torrens G, Peschiera I, Rodrigues-Lopes I, Krupka M, Garcia-Fernandez J, Melero R, Del Campo R, Eulalio A, Mateus A, Lopez-Bravo M, Rico AI, Cava F, Lopez D
Nat Commun (2024) 15 pp. 5583-5583 [ DOI: doi:10.1038/s41467-024-49951-1 Pubmed: 38961085 ]
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8p99
Q-score: 0.343
Gargantilla M, Frances C, Adhav A, Forcada-Nadal A, Martinez-Gualda B, Marti-Mari O, Lopez-Redondo ML, Melero R, Marco-Marin C, Gougeard N, Espinosa C, Rubio-Del-Campo A, Ruiz-Partida R, Hernandez-Sierra MDP, Villamayor-Belinchon L, Bravo J, Llacer JL, Marina A, Rubio V, San-Felix A, Geller R, Perez-Perez MJ
J Med Chem (2023) 66 pp. 10432-10457 [ DOI: doi:10.1021/acs.jmedchem.3c00576 Pubmed: 37471688 ]
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8p9y
Q-score: 0.117
Gargantilla M, Frances C, Adhav A, Forcada-Nadal A, Martinez-Gualda B, Marti-Mari O, Lopez-Redondo ML, Melero R, Marco-Marin C, Gougeard N, Espinosa C, Rubio-Del-Campo A, Ruiz-Partida R, Hernandez-Sierra MDP, Villamayor-Belinchon L, Bravo J, Llacer JL, Marina A, Rubio V, San-Felix A, Geller R, Perez-Perez MJ
J Med Chem (2023) 66 pp. 10432-10457 [ DOI: doi:10.1021/acs.jmedchem.3c00576 Pubmed: 37471688 ]
- [(2~{s})-2-[[4-(2-azanylethanoylamino)-7-[[(2~{s})-3-[2-(4-nitrophenyl)sulfanyl-1~{h}-indol-3-yl]-1-oxidanylidene-1-sodiooxy-propan-2-yl]amino]-4-[3-[[(2~{s})-3-[2-(4-nitrophenyl)sulfanyl-1~{h}-indol-3-yl]-1-oxidanylidene-1-sodiooxy-propan-2-yl]amino]-3-oxidanylidene-propyl]-7-oxidanylidene-heptanoyl]amino]-3-[2-(4-nitrophenyl)sulfanyl-1~{h}-indol-3-yl]propanoyl]oxysodium (1 kDa, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein - severe acute respiratory syndrome coronavirus 2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sodium ion (22 Da, Ligand)
- Spike protein s1,spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7kvc
Q-score: 0.305
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 7kvd
Q-score: 0.211
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7r4i
Q-score: 0.241
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Camel-derived nanobody 2.15 (13 kDa, Protein from Camelus dromedarius)
- Nanobody 2.15 (Complex from Camelus dromedarius)
- The trimeric sars-coov-2 spike in complex with the 2.15 neutralizing nanobody (10 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7r4q
Q-score: -0.014
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody 1.29 (Complex from Camelus dromedarius)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Camel-derived nanobody 1.29 (13 kDa, Protein from Camelus dromedarius)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- The trimeric sars-coov-2 spike in complex with the 1.29 neutralizing nanobody (10 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7r4r
Q-score: 0.03
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- The trimeric sars-coov-2 spike in complex with the 1.10 neutralizing nanobody (10 MDa, Complex)
- Nanobody 1.10 (Complex from Camelus dromedarius)
- Camel-derived nanobody 1.10 (13 kDa, Protein from Camelus dromedarius)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
SARS-CoV-2 spike protein S:D614G + S:A222V variant
Ginex T, Marco-Marín C, Wieczór M, Mata CP, Krieger J, Ruiz-Rodriguez P, López-Redondo ML, Francés-Gómez C, Melero R, Sánchez-Sorzano CÓ, Martínez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llácer JL, Carazo JM
PLoS Pathog (2022) 18 [ Pubmed: 35816514 DOI: 10.1371/journal.ppat.1010631 ]
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