SARS-CoV-2 spike protein S:D614G + S:A222V variant
Ginex T, Marco-Marín C, Wieczór M, Mata CP, Krieger J, Ruiz-Rodriguez P, López-Redondo ML, Francés-Gómez C, Melero R, Sánchez-Sorzano CÓ, Martínez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llácer JL, Carazo JM
PLoS Pathog (2022) 18 [ Pubmed: 35816514 DOI: 10.1371/journal.ppat.1010631 ]
Image sets:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:D614G mutant 1-up
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
- Sars-cov-2 s protein s:d614g mutant (340 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Escherichia virus T4)
SARS-CoV-2 S protein S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
Cryo-EM structure of the UPF-EJC complex
Melero R, Buchwald G, Castano R, Raabe M, Gil D, Lazaro M, Urlaub H, Conti E, Llorca O
Nat Struct Mol Biol (2012) 19 pp. 498-505 [ DOI: doi:10.1038/nsmb.2287 Pubmed: 22522823 ]
- Up-frameshift protein 2 (148 kDa, Protein from Homo sapiens)
- Complex containing the nmd proteins upf1, upf2 and upf3 bound to the exon junction complex (ejc) (390 kDa, Sample)
- Btz (17 kDa, Protein from Homo sapiens)
- Mago (16 kDa, Protein from Homo sapiens)
- Up-frameshift protein 3b (56 kDa, Protein from Homo sapiens)
- Y14 (10 kDa, Protein from Homo sapiens)
- Eif4aiii (45 kDa, Protein from Homo sapiens)
- (u)8 rna (3 kDa, RNA from Homo sapiens)
- Up-frameshift protein 1 (90 kDa, Protein from Homo sapiens)