Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 7kvc
Q-score: 0.305
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 7kvd
Q-score: 0.211
Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Mikkelsen E, Tijman A, Arranz R, Alfonso V, Arellano SM, Goldbaum FA, Sterckx YGJ, Carazo JM, Kaufman SB, Dans PD, Del Vas M, Otero LH
Mbio (2023) 14 pp. e0002323-e0002323 [ Pubmed: 36786587 DOI: doi:10.1128/mbio.00023-23 ]
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7r4i
Q-score: 0.241
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- Camel-derived nanobody 2.15 (13 kDa, Protein from Camelus dromedarius)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- Nanobody 2.15 (Complex from Camelus dromedarius)
- The trimeric sars-coov-2 spike in complex with the 2.15 neutralizing nanobody (10 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7r4q
Q-score: -0.014
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- Nanobody 1.29 (Complex from Camelus dromedarius)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Camel-derived nanobody 1.29 (13 kDa, Protein from Camelus dromedarius)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- The trimeric sars-coov-2 spike in complex with the 1.29 neutralizing nanobody (10 MDa, Complex from Severe acute respiratory syndrome coronavirus 2)
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7r4r
Q-score: 0.03
Casasnovas JM, Margolles Y, Noriega MA, Guzman M, Arranz R, Melero R, Casanova M, Corbera JA, Jimenez-de-Oya N, Gastaminza P, Garaigorta U, Saiz JC, Martin-Acebes MA, Fernandez LA
Front Immunol (2022) 13 pp. 863831-863831 [ Pubmed: 35547740 DOI: doi:10.3389/fimmu.2022.863831 ]
- The trimeric sars-coov-2 spike in complex with the 1.10 neutralizing nanobody (10 MDa, Complex)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Camel-derived nanobody 1.10 (13 kDa, Protein from Camelus dromedarius)
- Sars-cov-2 spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Nanobody 1.10 (Complex from Camelus dromedarius)
SARS-CoV-2 spike protein S:D614G + S:A222V variant
Ginex T, Marco-Marín C, Wieczór M, Mata CP, Krieger J, Ruiz-Rodriguez P, López-Redondo ML, Francés-Gómez C, Melero R, Sánchez-Sorzano CÓ, Martínez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llácer JL, Carazo JM
PLoS Pathog (2022) 18 [ Pubmed: 35816514 DOI: 10.1371/journal.ppat.1010631 ]
Image sets:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qdg
Q-score: 0.31
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
SARS-CoV-2 S protein S:D614G mutant 1-up
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7qdh
Q-score: 0.079
Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Ruiz-Rodriguez P, Lopez-Redondo ML, Frances-Gomez C, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Arranz R, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM
PLoS Pathog (2022) 18 pp. e1010631-e1010631 [ DOI: doi:10.1371/journal.ppat.1010631 Pubmed: 35816514 ]
- Sars-cov-2 s protein s:d614g mutant (340 kDa, Complex from Severe acute respiratory syndrome-related coronavirus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein,fibritin (138 kDa, Protein from Escherichia virus T4)