Kawamoto A, Vizarraga D, Marcos-Silva M, Martin J, Makino F, Miyata T, Roel J, Marcos E, Aparicio D, Fita I, Miyata M, Pinyol J, Namba K, Kenri T
To Be Published
- Water (18 Da, Ligand)
- Anti-adhesive fab fragment (Complex from Mus musculus)
- Adhesin p1 (158 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Heavy chain fab (23 kDa, Protein from Mus musculus)
- Mycoplasma pneumoniae adhesin p1 complexed with the anti-adhesive fab fragment. (200 kDa, Complex)
- Light chain fab (24 kDa, Protein from Mus musculus)
- Adhesin p1 (Complex from Mycoplasmoides pneumoniae M129)
Kawamoto A, Vizarraga D, Marcos-Silva M, Martin J, Makino F, Miyata T, Roel J, Marcos E, Aparicio D, Fita I, Miyata M, Pinol J, Namba K, Kenri T
bioRxiv (2023) [ DOI: doi:10.1101/2023.07.31.551205 ]
Pentacylindrical allophycocyanin core from Thermosynechococcus vulcanus
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7vea
Q-score: 0.415
Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K
Nat Commun (2022) 13 pp. 3389-3389 [ Pubmed: 35715389 DOI: doi:10.1038/s41467-022-30962-9 ]
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobiliprotein apce (127 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobilisome core component (18 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycocyanobilin (588 Da, Ligand)
- Allophycocyanin beta chain (17 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Allophycocyanin alpha chain (17 kDa, Protein from Thermosynechococcus vestitus BP-1)
- Phycobilisome core complex from thermosynechococcus vulcanus (Complex from Thermosynechococcus vulcanus NIES-2134)
Phycocyanin rod structure of cyanobacterial phycobilisome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7veb
Q-score: 0.343
Kawakami K, Hamaguchi T, Hirose Y, Kosumi D, Miyata M, Kamiya N, Yonekura K
Nat Commun (2022) 13 pp. 3389-3389 [ Pubmed: 35715389 DOI: doi:10.1038/s41467-022-30962-9 ]
- Phycobilisome rod-core linker polypeptide cpcg2 (28 kDa, Protein from Thermosynechococcus elongatus BP-1)
- C-phycocyanin beta subunit (18 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod (32 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin alpha subunit (17 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Phycocyanin rod complex of cyanobacterial phyocobilisome (Complex from Thermosynechococcus vulcanus NIES-2134)
Negative stain map of chained F1-like ATPase complex of Mycoplasma mobile
Toyonaga T, Kato T, Kawamoto A, Kodera N, Hamaguchi T, Tahara YO, Ando T, Namba K, Miyata M
Mbio (2021) 12 pp. e0141421-e0141421 [ Pubmed: 34281395 DOI: doi:10.1128/mBio.01414-21 ]
Vizarraga D, Kawamoto A, Matsumoto U, Illanes R, Pérez-Luque R, Martín J, Mazzolini R, Bierge P, Pich OQ, Espasa M, Sanfeliu I, Esperalba J, Fernández-Huerta M, Scheffer MP, Pinyol J, Frangakis AS, Lluch-Senar M, Mori S, Shibayama K, Kenri T, Kato T, Namba K, Fita I, Miyata M, Aparicio D
Nat Commun (2020) 11 [ Pubmed: 33057023 DOI: 10.1038/s41467-020-18777-y ]
Image sets:
Cryo-EM structure of the human pathogen Mycoplasma pneumoniae P1
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7bwm
Q-score: 0.558
Vizarraga D, Kawamoto A, Matsumoto U, Illanes R, Perez-Luque R, Martin J, Mazzolini R, Bierge P, Pich OQ, Espasa M, Sanfeliu I, Esperalba J, Fernandez-Huerta M, Scheffer MP, Pinyol J, Frangakis AS, Lluch-Senar M, Mori S, Shibayama K, Kenri T, Kato T, Namba K, Fita I, Miyata M, Aparicio D
Nat Commun (2020) 11 pp. 5188-5188 [ DOI: doi:10.1038/s41467-020-18777-y Pubmed: 33057023 ]
- Nap protein p1 (170 MDa, Cellular component from Mycoplasma pneumoniae M129)
- Adhesin p1 (143 kDa, Protein from Mycoplasma pneumoniae M129)
Detailed structures of the gliding machinery observed by ECT
Nishikawa MS, Nakane D, Toyonaga T, Kawamoto A, Kato T, Namba K, Miyata M
Mbio (2019) 10 [ Pubmed: 31874918 DOI: doi:10.1128/mBio.02846-19 ]