Resolution: 2.98 Å
EM Method: Helical reconstruction
Fitted PDBs: 9az6
Q-score: 0.485
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Talin(r13-dd) (Complex from Mus musculus)
- Actin, alpha skeletal muscle (41 kDa, Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- Talin-1 (26 kDa, Protein from Mus musculus)
- F-actin-talin(r13-dd) complex (Complex)
F-actin-Talin(R13-DD) complex, half-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
F-actin-Talin(R13-DD) complex, single-decorated
Biertumpfel C, Yamada Y, Vasquez-Montes V, Truong TV, Cada AK, Mizuno N
PNAS (2025) 122 pp. e2405922122-e2405922122 [ Pubmed: 39903122 DOI: doi:10.1073/pnas.2405922122 ]
- Talin(r13-dd) (Protein from Mus musculus)
- Talin(r13-dd) (Complex from Mus musculus)
- F-actin (acta1) (Protein from Oryctolagus cuniculus)
- F-actin (Complex from Oryctolagus cuniculus)
- F-actin-talin(r13-dd) complex (Complex)
Human platelets in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertümpfel C, Mizuno N
Nat Commun (2023) 14 [ Pubmed: 36739444 DOI: 10.1038/s41467-023-36279-5 ]
Image sets:
Tomogram of platelet filopodia in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Tomogram of platelet protrusion with microtubule in presence of SARS-CoV-2 spike protein
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
SARS-CoV-2 spike protein closed conformation
Kuhn CC, Basnet N, Bodakuntla S, Alvarez-Brecht P, Nichols S, Martinez-Sanchez A, Agostini L, Soh YM, Takagi J, Biertumpfel C, Mizuno N
Nat Commun (2023) 14 pp. 620-620 [ Pubmed: 36739444 DOI: doi:10.1038/s41467-023-36279-5 ]
Cryo-EM structure of Cytochrome bo3 from Escherichia coli, apo structure with DMSO
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 7xmc
Q-score: 0.526
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ DOI: doi:10.1038/s41467-022-34771-y Pubmed: 36481732 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Unknown atom or ion (744 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 7xmd
Q-score: 0.535
Nishida Y, Yanagisawa S, Morita R, Shigematsu H, Shinzawa-Itoh K, Yuki H, Ogasawara S, Shimuta K, Iwamoto T, Nakabayashi C, Matsumura W, Kato H, Gopalasingam C, Nagao T, Qaqorh T, Takahashi Y, Yamazaki S, Kamiya K, Harada R, Mizuno N, Takahashi H, Akeda Y, Ohnishi M, Ishii Y, Kumasaka T, Murata T, Muramoto K, Tosha T, Shiro Y, Honma T, Shigeta Y, Kubo M, Takashima S, Shintani Y
Nat Commun (2022) 13 pp. 7591-7591 [ DOI: doi:10.1038/s41467-022-34771-y Pubmed: 36481732 ]
- Cytochrome bo(3) ubiquinol oxidase subunit 3 (22 kDa, Protein from Escherichia coli)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome bo3 ubiquinol oxidase (144 kDa, Complex from Escherichia coli)
- Unknown atom or ion (Ligand)
- Cytochrome bo(3) ubiquinol oxidase subunit 4 (12 kDa, Protein from Escherichia coli)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Heme o (838 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Methyl 3-oxidanyl-5-[oxidanyl(oxidanylidene)-$l^{4}-azanyl]-1-benzothiophene-2-carboxylate (253 Da, Ligand)
- Ubiquinol oxidase subunit 2 (36 kDa, Protein from Escherichia coli)
- Cytochrome bo(3) ubiquinol oxidase subunit 1 (74 kDa, Protein from Escherichia coli)
Nedozralova H, Basnet N, Ibiricu I, Bodakuntla S, Biertumpfel C, Mizuno N
J Cell Biol (2022) 221 [ DOI: doi:10.1083/jcb.202106086 Pubmed: 35262630 ]