Klebsiella pneumoniae AcrB multidrug efflux pump apo form
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8ffk
Q-score: 0.574
Zhang Z, Morgan CE, Bonomo RA, Yu EW
Mbio (2023) 14 pp. e0065923-e0065923 [ DOI: doi:10.1128/mbio.00659-23 Pubmed: 37067435 ]
- Acrb (Complex from Klebsiella pneumoniae)
- Efflux pump membrane transporter (113 kDa, Protein from Klebsiella pneumoniae)
Erythromycin bound Klebsiella pneumoniae AcrB multidrug efflux pump
Resolution: 2.96 Å
EM Method: Single-particle
Fitted PDBs: 8ffs
Q-score: 0.535
Zhang Z, Morgan CE, Bonomo RA, Yu EW
Mbio (2023) 14 pp. e0065923-e0065923 [ DOI: doi:10.1128/mbio.00659-23 Pubmed: 37067435 ]
- Acrb (Complex from Klebsiella pneumoniae)
- Erythromycin a (733 Da, Ligand)
- Efflux pump membrane transporter (113 kDa, Protein from Klebsiella pneumoniae)
Trimer of aminoglycoside efflux pump AcrD
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8f3e
Q-score: 0.408
Zhang Z, Morgan CE, Cui M, Yu EW
Mbio (2023) 14 pp. e0338322-e0338322 [ DOI: doi:10.1128/mbio.03383-22 Pubmed: 36625574 ]
- Efflux pump membrane transporter (113 kDa, Protein from Escherichia coli)
- Acrd (Complex from Escherichia coli)
Dimer of aminoglycoside efflux pump AcrD
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8f4n
Q-score: 0.543
Zhang Z, Morgan CE, Cui M, Yu EW
Mbio (2023) 14 pp. e0338322-e0338322 [ DOI: doi:10.1128/mbio.03383-22 Pubmed: 36625574 ]
- Efflux pump membrane transporter (113 kDa, Protein from Escherichia coli)
- Acrd (Complex from Escherichia coli)
Gentamicin bound aminoglycoside efflux pump AcrD
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8f4r
Q-score: 0.535
Zhang Z, Morgan CE, Cui M, Yu EW
Mbio (2023) 14 pp. e0338322-e0338322 [ DOI: doi:10.1128/mbio.03383-22 Pubmed: 36625574 ]
- Efflux pump membrane transporter (113 kDa, Protein from Escherichia coli)
- (2r,3r,4r,5r)-2-((1s,2s,3r,4s,6r)-4,6-diamino-3-((2r,3r,6s)-3-amino-6-(aminomethyl)-tetrahydro-2h-pyran-2-yloxy)-2-hydr oxycyclohexyloxy)-5-methyl-4-(methylamino)-tetrahydro-2h-pyran-3,5-diol (449 Da, Ligand)
- Acrd (Complex from Escherichia coli)
Dimer of aminoglycoside efflux pump AcrD treated with gentamicin
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8f56
Q-score: 0.507
Zhang Z, Morgan CE, Cui M, Yu EW
Mbio (2023) 14 pp. e0338322-e0338322 [ DOI: doi:10.1128/mbio.03383-22 Pubmed: 36625574 ]
- Efflux pump membrane transporter (113 kDa, Protein from Escherichia coli)
- Acrd (Complex from Escherichia coli)
Multidrug Efflux pump AdeJ with TP-6076 bound
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7ry3
Q-score: 0.562
Morgan CE, Zhang Z, Bonomo RA, Yu EW
Mbio (2022) 13 pp. e0373221-e0373221 [ DOI: doi:10.1128/mbio.03732-21 Pubmed: 35100868 ]
- (4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
- Efflux pump membrane transporter (114 kDa, Protein from Acinetobacter baumannii)
- Multidrug efflux pump adej (Complex from Acinetobacter baumannii)
A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 7ryf
Q-score: 0.541
Morgan CE, Zhang Z, Bonomo RA, Yu EW
Mbio (2022) 13 pp. e0373221-e0373221 [ DOI: doi:10.1128/mbio.03732-21 Pubmed: 35100868 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- A. baumannii 70s ribosome in complex with p-site trna and tp-6076 (Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- (4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 7ryg
Q-score: 0.596
Morgan CE, Zhang Z, Bonomo RA, Yu EW
Mbio (2022) 13 pp. e0373221-e0373221 [ DOI: doi:10.1128/mbio.03732-21 Pubmed: 35100868 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- (4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- A. baumannii 70s ribosome in complex with e-site trna and tp-6076 (Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
A. baumannii Ribosome-TP-6076 complex: Empty 70S
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 7ryh
Q-score: 0.587
Morgan CE, Zhang Z, Bonomo RA, Yu EW
Mbio (2022) 13 pp. e0373221-e0373221 [ DOI: doi:10.1128/mbio.03732-21 Pubmed: 35100868 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- A. baumannii 70s ribosome in complex with tp-6076 (Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- (4s,4as,5ar,12as)-4-(diethylamino)-3,10,12,12a-tetrahydroxy-1,11-dioxo-8-[(2s)-pyrrolidin-2-yl]-7-(trifluoromethyl)-1,4,4a,5,5a,6,11,12a-octahydrotetracene-2-carboxamide (579 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))