Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7u5h
Q-score: 0.495
Morgan CE, Zhang Z, Miyagi M, Golczak M, Yu EW
Cell Rep (2022) 41 pp. 111876-111876 [ Pubmed: 36577381 DOI: doi:10.1016/j.celrep.2022.111876 ]
- Dodecamer of aspartyl aminopeptidase (Complex from Bos taurus)
- Zinc ion (65 Da, Ligand)
- Aspartyl aminopeptidase (51 kDa, Protein from Bos taurus)
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 7u5l
Q-score: 0.636
Morgan CE, Zhang Z, Miyagi M, Golczak M, Yu EW
Cell Rep (2022) 41 pp. 111876-111876 [ Pubmed: 36577381 DOI: doi:10.1016/j.celrep.2022.111876 ]
- Fe (iii) ion (55 Da, Ligand)
- Ferritin heavy chain (21 kDa, Protein from Bos taurus)
- Ferritin (Complex from Bos taurus)
Human Brain Ferritin Heavy Chain
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8dnp
Q-score: 0.644
Tringides ML, Zhang Z, Morgan CE, Su CC, Yu EW
Life Sci Alliance (2023) 6 [ DOI: doi:10.26508/lsa.202201724 Pubmed: 36450447 ]
- Ferritin heavy chain (21 kDa, Protein from Homo sapiens)
- Ferritin heavy chain (Complex from Homo sapiens)
- Fe (iii) ion (55 Da, Ligand)
A. baumannii Ribosome-Eravacycline complex: 30S
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 7m4u
Q-score: 0.587
Zhang Z, Morgan CE, Bonomo RA, Yu EW
Mbio (2021) 12 pp. e0103121-e0103121 [ Pubmed: 34044590 DOI: doi:10.1128/mBio.01031-21 ]
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- A baumannii 30s ribosome in complex with eravacycline (Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Water (18 Da, Ligand)
- Eravacycline (558 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6v3e
Q-score: 0.28
Morgan CE, Huang W, Rudin SD, Taylor DJ, Kirby JE, Bonomo RA, Yu EW
Mbio (2020) 11 [ DOI: doi:10.1128/mBio.03117-19 Pubmed: 31964740 ]
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter sp. ANC 5600)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter venetianus)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii)
- Acinetobacter baumannii small ribosomal subunit (2 MDa, Complex from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii (strain AB0057))
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter sp. 263903-1)