human liver mitochondrial Medium-chain specific acyl-CoA dehydrogenase
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 8sgp
Q-score: 0.587
Zhang Z, Tringides ML, Morgan CE, Miyagi M, Mears JA, Hoppel CL, Yu EW
Mol.Cell Proteomics (2023) 22 pp. 100666-100666 [ DOI: doi:10.1016/j.mcpro.2023.100666 Pubmed: 37839702 ]
human liver mitochondrial Isovaleryl-CoA dehydrogenase
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8sgr
Q-score: 0.559
Zhang Z, Tringides ML, Morgan CE, Miyagi M, Mears JA, Hoppel CL, Yu EW
Mol.Cell Proteomics (2023) 22 pp. 100666-100666 [ DOI: doi:10.1016/j.mcpro.2023.100666 Pubmed: 37839702 ]
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Isovaleryl-coa dehydrogenase, mitochondrial (46 kDa, Protein from Homo sapiens)
- Isovaleryl-coa dehydrogenase (Complex from Homo sapiens)
human liver mitochondrial Short-chain specific acyl-CoA dehydrogenase
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8sgs
Q-score: 0.506
Zhang Z, Tringides ML, Morgan CE, Miyagi M, Mears JA, Hoppel CL, Yu EW
Mol.Cell Proteomics (2023) 22 pp. 100666-100666 [ DOI: doi:10.1016/j.mcpro.2023.100666 Pubmed: 37839702 ]
- Coenzyme a (767 Da, Ligand)
- Short-chain specific acyl-coa dehydrogenase (Complex from Homo sapiens)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Short-chain specific acyl-coa dehydrogenase, mitochondrial (44 kDa, Protein from Homo sapiens)
human liver mitochondrial Catalase
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8sgv
Q-score: 0.594
Zhang Z, Tringides ML, Morgan CE, Miyagi M, Mears JA, Hoppel CL, Yu EW
Mol.Cell Proteomics (2023) 22 pp. 100666-100666 [ DOI: doi:10.1016/j.mcpro.2023.100666 Pubmed: 37839702 ]
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Catalase (59 kDa, Protein from Homo sapiens)
- Catalase (Complex from Homo sapiens)
human liver mitochondrial Aspartate aminotransferase
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8skr
Q-score: 0.51
Zhang Z, Tringides ML, Morgan CE, Miyagi M, Mears JA, Hoppel CL, Yu EW
Mol.Cell Proteomics (2023) 22 pp. 100666-100666 [ DOI: doi:10.1016/j.mcpro.2023.100666 Pubmed: 37839702 ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Aspartate aminotransferase (Complex from Homo sapiens)
- Aspartate aminotransferase, mitochondrial (47 kDa, Protein from Homo sapiens)
Multi-drug efflux pump RE-CmeB bound with Erythromycin
Resolution: 3.44 Å
EM Method: Single-particle
Fitted PDBs: 8gk0
Q-score: 0.441
Zhang Z, Lizer N, Wu Z, Morgan CE, Yan Y, Zhang Q, Yu EW
Microbiol Spectr (2023) 11 pp. e0119723-e0119723 [ DOI: doi:10.1128/spectrum.01197-23 Pubmed: 37289051 ]
- Erythromycin a (733 Da, Ligand)
- Efflux pump membrane transporter (114 kDa, Protein from Campylobacter jejuni)
- Re-cmeb (Complex from Campylobacter jejuni)
Multi-drug efflux pump RE-CmeB bound with Chloramphenicol
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8gk4
Q-score: 0.476
Zhang Z, Lizer N, Wu Z, Morgan CE, Yan Y, Zhang Q, Yu EW
Microbiol Spectr (2023) 11 pp. e0119723-e0119723 [ DOI: doi:10.1128/spectrum.01197-23 Pubmed: 37289051 ]
- Chloramphenicol (323 Da, Ligand)
- Efflux pump membrane transporter (114 kDa, Protein from Campylobacter jejuni)
- Re-cmeb (Complex from Campylobacter jejuni)
A. baumannii ribosome-Streptothricin-F complex: 70S with P-site tRNA
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7uvv
Q-score: 0.61
Morgan CE, Kang YS, Green AB, Smith KP, Dowgiallo MG, Miller BC, Chiaraviglio L, Truelson KA, Zulauf KE, Rodriguez S, Kang AD, Manetsch R, Yu EW, Kirby JE
PLoS Biol (2023) 21 pp. e3002091-e3002091 [ Pubmed: 37192172 DOI: doi:10.1371/journal.pbio.3002091 ]
- 30s ribosomal protein s18 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l4 (21 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l20 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l13 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l5 (20 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s13 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- Streptothricin f (502 Da, Ligand)
- 50s ribosomal protein l16 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s17 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l22 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l35 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l18 (12 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l36 (4 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s12 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s3 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s10 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s6 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s8 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s20 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l32 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 16s ribosomal rna (500 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s16 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l2 (30 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s14 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l19 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l6 (19 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s9 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s11 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l14 (13 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l33 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l3 (22 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l29 (7 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s4 (23 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l23 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 23s ribosomal rna (945 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l30 (6 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s2 (27 kDa, Protein from Acinetobacter baumannii AB0057)
- Trna-met (24 kDa, RNA from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l24 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l17 (14 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s19 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- Sf-70s ribosome complex with p-site trna (Complex from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l34 (5 kDa, Protein from Acinetobacter baumannii AB0057)
- Zinc ion (65 Da, Ligand)
- 5s ribosomal rna (36 kDa, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s21 (8 kDa, Protein from Acinetobacter baumannii AB0057)
- Mrna (935 Da, RNA from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s15 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l15 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l27 (9 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s7 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 30s ribosomal protein s5 (17 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l9 (15 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l25 (10 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l21 (11 kDa, Protein from Acinetobacter baumannii AB0057)
- 50s ribosomal protein l28 (9 kDa, Protein from Acinetobacter baumannii AB0057)