Kalium channelrhodopsin 1 from Hyphochytrium catenoides (HcKCR1) embedded in peptidisc
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 8gi8
Q-score: 0.558
Morizumi T, Kim K, Li H, Govorunova EG, Sineshchekov OA, Wang Y, Zheng L, Bertalan E, Bondar AN, Askari A, Brown LS, Spudich JL, Ernst OP
Nat Commun (2023) 14 pp. 4365-4365 [ DOI: doi:10.1038/s41467-023-40041-2 Pubmed: 37474513 ]
- Water (18 Da, Ligand)
- Retinal (284 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Kalium channelrhodopsin 1 (30 kDa, Protein from Hyphochytrium catenoides)
- Sodium ion (22 Da, Ligand)
- Kalium channelrhodopsin 1 trimer reconstituted into nanodiscs (30 kDa, Complex from Hyphochytrium catenoides)
- Cholesterol (386 Da, Ligand)
Cation channelrhodopsin from Hyphochytrium catenoides (HcCCR) embedded in peptidisc
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8gi9
Q-score: 0.578
Morizumi T, Kim K, Li H, Govorunova EG, Sineshchekov OA, Wang Y, Zheng L, Bertalan E, Bondar AN, Askari A, Brown LS, Spudich JL, Ernst OP
Nat Commun (2023) 14 pp. 4365-4365 [ DOI: doi:10.1038/s41467-023-40041-2 Pubmed: 37474513 ]
- Water (18 Da, Ligand)
- Retinal (284 Da, Ligand)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cation channelrhodopsin (30 kDa, Protein from Hyphochytrium catenoides)
- Cation channelrhodopsin trimer reconstituted in peptidisc (30 kDa, Complex from Hyphochytrium catenoides)
- Cholesterol (386 Da, Ligand)
SARS-CoV-2 spike glycoprotein in complex with the ICO-hu23 neutralizing antibody Fab fragment
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8elj
Q-score: 0.343
Hermet P, Delache B, Herate C, Wolf E, Kivi G, Juronen E, Mumm K, Zusinaite E, Kainov D, Sankovski E, Virumae K, Planken A, Merits A, Besaw JE, Yee AW, Morizumi T, Kim K, Kuo A, Berriche A, Dereuddre-Bosquet N, Sconosciuti Q, Naninck T, Relouzat F, Cavarelli M, Ustav M, Wilson D, Ernst OP, Mannik A, LeGrand R, Ustav Jr M
PLoS Pathog (2023) 19 pp. e1011532-e1011532 [ DOI: doi:10.1371/journal.ppat.1011532 Pubmed: 37531329 ]
- Sars-cov-2 spike glycoprotein (Cellular component from Severe acute respiratory syndrome coronavirus 2)
- Ico-hu23 antibody fab light chain (22 kDa, Protein from Homo sapiens)
- Ico-hu23 antibody fab heavy chain (25 kDa, Protein from Homo sapiens)
- Ico-hu23 antibody fab fragment (Cellular component from Homo sapiens)
- Sars-cov-2 spike glycoprotein in complex with the ico-hu23 antibody fab fragment (Complex)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)