Electron Microscopy Data Bank

EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Namba K" AND author_name:"Fujii" AND author_name:"M"

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EMD-0869

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Structure of a membrane protein

Release date: April 14, 2021
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6lbh
Q-score: 0.461

Jin F, Sun M, Fujii T, Yamada Y, Wang J, Maturana AD, Wada M, Su S, Ma J, Takeda H, Kusakizako T, Tomita A, Nakada-Nakura Y, Liu K, Uemura T, Nomura Y, Nomura N, Ito K, Nureki O, Namba K, Iwata S, Yu Y, Hattori M

PLoS Biol (2021) 19 pp. e3001231-e3001231 [ DOI: doi:10.1371/journal.pbio.3001231 Pubmed: 33905418 ]

Sample:

Fab heavy chain (24 kDa, Protein from Mus musculus)
Magnesium transporter mgte (19 kDa, Protein from Thermus thermophilus HB8)
Mgte-fab complex (Complex from Thermus thermophilus)
Fab light chain (23 kDa, Protein from Mus musculus)

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EMD-6102

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Electron cryo-microscopy of DNGR-1 in complex with F-actin

Release date: May 27, 2015
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 3j82
Q-score: 0.134

Hanc P, Fujii T, Iborra S, Yamada Y, Huotari J, Schulz O, Ahrens S, Kjaer S, Way M, Sancho D, Namba K, Reis e Sousa C

Immunity (2015) 42 pp. 839-849 [ Pubmed: 25979418 DOI: doi:10.1016/j.immuni.2015.04.009 ]

Sample:

EMD-5352

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Structure of a type III secretion needle

Release date: Feb. 20, 2012
Resolution: 7.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 3j0r
Q-score: 0.14

Fujii T, Cheung M, Blanco A, Kato T, Blocker AJ, Namba K

PNAS (2012) 109 pp. 4461-4466 [ DOI: doi:10.1073/pnas.1116126109 Pubmed: 22388746 ]

Sample:

Shigella needle (Sample)
Mxih (Protein from Shigella flexneri)

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