Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8hlb
Q-score: 0.446
Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K
Commun Biol (2023) 6 pp. 987-987 [ DOI: doi:10.1038/s42003-023-05326-8 Pubmed: 37758868 ]
- Tr92 light chain (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of biparatopic antibody bp109-92 in complex with tnfr2 (Complex from Homo sapiens)
- Tr109 light chain (23 kDa, Protein from Homo sapiens)
- Tumor necrosis factor receptor superfamily member 1b,maltose/maltodextrin-binding periplasmic protein (60 kDa, Protein from Escherichia coli (strain K12))
- Tr109 heavy chain (25 kDa, Protein from Homo sapiens)
- Tr92 heavy chain (25 kDa, Protein from Homo sapiens)
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 [ Pubmed: 37429870 DOI: 10.1038/s41467-023-39807-5 ]
Image sets:
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 [ Pubmed: 37429870 DOI: 10.1038/s41467-023-39807-5 ]
Image sets:
Cryo-EM structure of KpFtsZ-monobody double helical tube
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8h1o
Q-score: 0.621
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Monobody (Complex from Homo sapiens)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Cryo-em structure of kpftsz-monobody double helical tube (Complex)
- Mb(ec/kpftsz_s1) (9 kDa, Protein from Homo sapiens)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Cryo-EM structure of KpFtsZ single filament
Resolution: 3.03 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ibn
Q-score: 0.36
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Cryo-em structure of kpftsz single filament (Complex)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Potassium ion (39 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
GroEL on hydrophilized graphene grid (low particle density)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets:
SARS-CoV-2 spike protein (1-up RBD) on EG-grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa J, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 [ DOI: 10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
Image sets: