Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 8hlb
Q-score: 0.446
Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K
Commun Biol (2023) 6 pp. 987-987 [ DOI: doi:10.1038/s42003-023-05326-8 Pubmed: 37758868 ]
- Tr92 light chain (23 kDa, Protein from Homo sapiens)
- Cryo-em structure of biparatopic antibody bp109-92 in complex with tnfr2 (Complex from Homo sapiens)
- Tr109 light chain (23 kDa, Protein from Homo sapiens)
- Tumor necrosis factor receptor superfamily member 1b,maltose/maltodextrin-binding periplasmic protein (60 kDa, Protein from Escherichia coli (strain K12))
- Tr109 heavy chain (25 kDa, Protein from Homo sapiens)
- Tr92 heavy chain (25 kDa, Protein from Homo sapiens)
Cryo-EM structure of KpFtsZ-monobody double helical tube
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8h1o
Q-score: 0.621
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Monobody (Complex from Homo sapiens)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Cryo-em structure of kpftsz-monobody double helical tube (Complex)
- Mb(ec/kpftsz_s1) (9 kDa, Protein from Homo sapiens)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Cryo-EM structure of KpFtsZ single filament
Resolution: 3.03 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ibn
Q-score: 0.36
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Cryo-em structure of kpftsz single filament (Complex)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Potassium ion (39 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
GroEL on EG-grid stored for 3 months after graphene oxidation
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]
- Groel (802 kDa, Complex from Escherichia coli)
- Groel (Protein from Escherichia coli)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]
- Groel (802 kDa, Complex from Escherichia coli)
- Groel (Protein from Escherichia coli)
GroEL on hydrophilized graphene grid (high particle density)
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]
- Groel (802 kDa, Complex from Escherichia coli)
- Groel (Protein from Escherichia coli)
SARS-CoV-2 spike protein (1-up RBD) on EG-grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]
SARS-CoV-2 spike protein (1-up RBD) on Quantifoil grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ Pubmed: 36755111 DOI: doi:10.1038/s41598-023-29396-0 ]