Kawamoto A, Vizarraga D, Marcos-Silva M, Martin J, Makino F, Miyata T, Roel J, Marcos E, Aparicio D, Fita I, Miyata M, Pinyol J, Namba K, Kenri T
To Be Published
- Water (18 Da, Ligand)
- Anti-adhesive fab fragment (Complex from Mus musculus)
- Adhesin p1 (158 kDa, Protein from Mycoplasmoides pneumoniae M129)
- Heavy chain fab (23 kDa, Protein from Mus musculus)
- Mycoplasma pneumoniae adhesin p1 complexed with the anti-adhesive fab fragment. (200 kDa, Complex)
- Light chain fab (24 kDa, Protein from Mus musculus)
- Adhesin p1 (Complex from Mycoplasmoides pneumoniae M129)
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8zdt
Q-score: 0.629
Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K
Commun Biol (2025) [ ]
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8zdu
Q-score: 0.603
Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K
Commun Biol (2025) [ ]
Resolution: 2.08 Å
EM Method: Helical reconstruction
Fitted PDBs: 9iwq
Q-score: 0.716
Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K
To Be Published
Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase (h1147a) large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- D-fructose dehydrogenase (h1147a) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- D-fructose dehydrogenase (n1146a) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fructose dehydrogenase (n1146a) large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Fe3-s4 cluster (295 Da, Ligand)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8jej
Q-score: 0.653
Suzuki Y, Makino F, Miyata T, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 [ DOI: doi:10.1021/acscatal.3c03769 ]
- D-fructose dehydrogenase from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jek
Q-score: 0.619
Suzuki Y, Makino F, Miyata T, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 [ DOI: doi:10.1021/acscatal.3c03769 ]
- D-fructose dehydrogenase from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gy2
Q-score: 0.615
Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 pp. 7955-7965 [ DOI: doi:10.1021/acscatal.3c01962 ]
- Ubiquinone-10 (863 Da, Ligand)
- Alcohol dehydrogenase (quinone), dehydrogenase subunit (82 kDa, Protein from Gluconobacter oxydans 621H)
- Alcohol dehydrogenase (quinone), cytochrome c subunit (51 kDa, Protein from Gluconobacter oxydans 621H)
- Alcohol dehydrogenase from gluconobacter oxydans (150 kDa, Complex from Gluconobacter oxydans)
- Small subunit of alcohol dehydrogenase (14 kDa, Protein from Gluconobacter oxydans)
- Pyrroloquinoline quinone (330 Da, Ligand)
- Heme c (618 Da, Ligand)
- Calcium ion (40 Da, Ligand)
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gy3
Q-score: 0.588
Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 pp. 7955-7965 [ DOI: doi:10.1021/acscatal.3c01962 ]
- Ubiquinone-10 (863 Da, Ligand)
- Small subunit of aldehyde dehydrogenase (16 kDa, Protein from Gluconobacter oxydans)
- Cytochrome c subunit of aldehyde dehydrogenase (48 kDa, Protein from Gluconobacter oxydans)
- Large subunit of aldehyde dehydrogenase (83 kDa, Protein from Gluconobacter oxydans)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Heme c (618 Da, Ligand)
- (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v) (844 Da, Ligand)
- Aldehyde dehydrogenase from gluconobacter oxydans (150 kDa, Complex from Gluconobacter oxydans)