Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase (h1147a) large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- D-fructose dehydrogenase (h1147a) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- D-fructose dehydrogenase (n1146a) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fructose dehydrogenase (n1146a) large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Fe3-s4 cluster (295 Da, Ligand)
Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- D-fructose dehydrogenase (n1146q) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
Fukawa E, Suzuki Y, Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Sowa K, Kitazumi Y, Shirai O
Electrochim Acta (2024) 490 [ DOI: doi:10.1016/j.electacta.2024.144271 ]
- D-fructose dehydrogenase (n1190a) from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8jej
Q-score: 0.653
Suzuki Y, Makino F, Miyata T, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 [ DOI: doi:10.1021/acscatal.3c03769 ]
- D-fructose dehydrogenase from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jek
Q-score: 0.619
Suzuki Y, Makino F, Miyata T, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 [ DOI: doi:10.1021/acscatal.3c03769 ]
- D-fructose dehydrogenase from gluconobacter japonicus (140 kDa, Complex from Gluconobacter japonicus)
- Fructose dehydrogenase small subunit (20 kDa, Protein from Gluconobacter japonicus)
- Ubiquinone-10 (863 Da, Ligand)
- Fructose dehydrogenase cytochrome subunit (52 kDa, Protein from Gluconobacter japonicus)
- Heme c (618 Da, Ligand)
- Flavin-adenine dinucleotide (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Fructose dehydrogenase large subunit (59 kDa, Protein from Gluconobacter japonicus)
Cryo-EM Structure of Membrane-Bound Alcohol Dehydrogenase from Gluconobacter oxydans
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8gy2
Q-score: 0.615
Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 pp. 7955-7965 [ DOI: doi:10.1021/acscatal.3c01962 ]
- Ubiquinone-10 (863 Da, Ligand)
- Alcohol dehydrogenase (quinone), dehydrogenase subunit (82 kDa, Protein from Gluconobacter oxydans 621H)
- Alcohol dehydrogenase (quinone), cytochrome c subunit (51 kDa, Protein from Gluconobacter oxydans 621H)
- Alcohol dehydrogenase from gluconobacter oxydans (150 kDa, Complex from Gluconobacter oxydans)
- Small subunit of alcohol dehydrogenase (14 kDa, Protein from Gluconobacter oxydans)
- Pyrroloquinoline quinone (330 Da, Ligand)
- Heme c (618 Da, Ligand)
- Calcium ion (40 Da, Ligand)
Cryo-EM Structure of Membrane-Bound Aldehyde Dehydrogenase from Gluconobacter oxydans
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gy3
Q-score: 0.588
Adachi T, Miyata T, Makino F, Tanaka H, Namba K, Kano K, Sowa K, Kitazumi Y, Shirai O
ACS Catal (2023) 13 pp. 7955-7965 [ DOI: doi:10.1021/acscatal.3c01962 ]
- Ubiquinone-10 (863 Da, Ligand)
- Small subunit of aldehyde dehydrogenase (16 kDa, Protein from Gluconobacter oxydans)
- Cytochrome c subunit of aldehyde dehydrogenase (48 kDa, Protein from Gluconobacter oxydans)
- Large subunit of aldehyde dehydrogenase (83 kDa, Protein from Gluconobacter oxydans)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Heme c (618 Da, Ligand)
- (molybdopterin-cytosine dinucleotide-s,s)-dioxo-aqua-molybdenum(v) (844 Da, Ligand)
- Aldehyde dehydrogenase from gluconobacter oxydans (150 kDa, Complex from Gluconobacter oxydans)
Cryo-EM structure of KpFtsZ-monobody double helical tube
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8h1o
Q-score: 0.621
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Monobody (Complex from Homo sapiens)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Cryo-em structure of kpftsz-monobody double helical tube (Complex)
- Mb(ec/kpftsz_s1) (9 kDa, Protein from Homo sapiens)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Cryo-EM structure of KpFtsZ single filament
Resolution: 3.03 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ibn
Q-score: 0.36
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Cryo-em structure of kpftsz single filament (Complex)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Potassium ion (39 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)