Structure of the Salmonella flagellar MS-ring with C11 symmetry applied
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8zds
Q-score: 0.43
Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K
Commun Biol (2025) [ ]
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C33 symmetry applied
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 8zdt
Q-score: 0.629
Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K
Commun Biol (2025) [ ]
Structure of the RBM3 ring of Salmonella flagellar MS-ring protein FliF with C34 symmetry applied
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8zdu
Q-score: 0.603
Kinoshita M, Makino F, Miyata T, Imada K, Minamino T, Namba K
Commun Biol (2025) [ ]
Cryo-EM structure of Light-harvesting complex from Spinacia oleracea
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 8y15
Q-score: 0.709
Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R
Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ DOI: doi:10.1093/pnasnexus/pgae405 Pubmed: 39346626 ]
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Water (18 Da, Ligand)
- Light-harvesting complex ii from spinacia oleracea (700 kDa, Complex from Spinacia oleracea)
- Lutein (568 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
Cryo-EM structure of in vitro reconstituted Light-harvesting complex II trimer
Resolution: 2.37 Å
EM Method: Single-particle
Fitted PDBs: 8yee
Q-score: 0.678
Seki S, Miyata T, Norioka N, Tanaka H, Kurisu G, Namba K, Fujii R
Pnas Nexus (2024) 3 pp. pgae405-pgae405 [ DOI: doi:10.1093/pnasnexus/pgae405 Pubmed: 39346626 ]
- Water (18 Da, Ligand)
- Lutein (568 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- In vitro reconstituted light-harvesting complex ii (120 kDa, Complex from Spinacia oleracea)
- Chlorophyll a (893 Da, Ligand)
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH8.0 (3.23A)
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8yf6
Q-score: 0.394
Sterbova P, Wang CH, Carillo KJD, Lou YC, Kato T, Namba K, Tzou DM, Chang WH
Acs Infect Dis. (2024) 10 pp. 3304-3319 [ DOI: doi:10.1021/acsinfecdis.4c00407 Pubmed: 39087906 ]
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH6.5 (2.82A)
Resolution: 2.82 Å
EM Method: Single-particle
Fitted PDBs: 8yf7
Q-score: 0.364
Sterbova P, Wang CH, Carillo KJD, Lou YC, Kato T, Namba K, Tzou DM, Chang WH
Acs Infect Dis. (2024) 10 pp. 3304-3319 [ DOI: doi:10.1021/acsinfecdis.4c00407 Pubmed: 39087906 ]
Cryo-EM structure of Dragon Grouper nervous necrosis virus-like particle at pH5.0 (3.52A)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8yf8
Q-score: 0.321
Sterbova P, Wang CH, Carillo KJD, Lou YC, Kato T, Namba K, Tzou DM, Chang WH
Acs Infect Dis. (2024) 10 pp. 3304-3319 [ DOI: doi:10.1021/acsinfecdis.4c00407 Pubmed: 39087906 ]
Cryo-EM structure of Dragon Grouper nervous necrosis virion at pH6.5 (3.12A)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8yf9
Q-score: 0.317
Sterbova P, Wang CH, Carillo KJD, Lou YC, Kato T, Namba K, Tzou DM, Chang WH
Acs Infect Dis. (2024) 10 pp. 3304-3319 [ DOI: doi:10.1021/acsinfecdis.4c00407 Pubmed: 39087906 ]