A3B3 ring of V1-ATPase on EG-grid
Fujita J, Makino F, Asahara H, Moriguchi M, Kumano S, Anzai I, Kishikawa JI, Matsuura Y, Kato T, Namba K, Inoue T
Sci Rep (2023) 13 pp. 2279-2279 [ DOI: doi:10.1038/s41598-023-29396-0 Pubmed: 36755111 ]
- The chimeric complex of a3b3 ring from thermus thermophilus (Complex from Thermus thermophilus)
- The chimeric complex of a3b3 ring of v-atpase from thermus thermophilus and df subunit of v-atpase from human. (395 kDa, Complex)
- Df subunit from human (Complex from Homo sapiens)
- B subunit of v1-atpase from thermus thermophilus. (Protein from Thermus thermophilus HB8)
- A subunit of v1-atpase from thermus thermophilus. (Protein from Thermus thermophilus HB8)
Structure of a membrane protein
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6lbh
Q-score: 0.461
Jin F, Sun M, Fujii T, Yamada Y, Wang J, Maturana AD, Wada M, Su S, Ma J, Takeda H, Kusakizako T, Tomita A, Nakada-Nakura Y, Liu K, Uemura T, Nomura Y, Nomura N, Ito K, Nureki O, Namba K, Iwata S, Yu Y, Hattori M
PLoS Biol (2021) 19 pp. e3001231-e3001231 [ Pubmed: 33905418 DOI: doi:10.1371/journal.pbio.3001231 ]
- Fab heavy chain (24 kDa, Protein from Mus musculus)
- Magnesium transporter mgte (19 kDa, Protein from Thermus thermophilus HB8)
- Fab light chain (23 kDa, Protein from Mus musculus)
- Mgte-fab complex (Complex from Thermus thermophilus)
V/A-ATPase from Thermus thermophilus
Kishikawa JI, Nakanishi A, Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56862 Pubmed: 32639230 ]
- V/a-type atpase (650 MDa, Complex from Thermus thermophilus HB8)
V1-ATPase built from cryo-EM map of V/A-ATPase from Thermus thermophilus.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ly8
Q-score: 0.529
Kishikawa JI, Nakanishi A, Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56862 Pubmed: 32639230 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Soluble domain of v/a-atpase including v1, d, two eg stalks, and n-terminal of a-subunit (500 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase beta chain (53 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit d (24 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit f (11 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase alpha chain (63 kDa, Protein from Thermus thermophilus HB8)
The membrane-embedded Vo domain of V/A-ATPase from Thermus thermophilus
Resolution: 3.93 Å
EM Method: Single-particle
Fitted PDBs: 6ly9
Q-score: 0.417
Kishikawa JI, Nakanishi A, Furuta A, Kato T, Namba K, Tamakoshi M, Mitsuoka K, Yokoyama K
eLife (2020) 9 [ DOI: doi:10.7554/eLife.56862 Pubmed: 32639230 ]
- V-type atp synthase subunit c (35 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit e (20 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase subunit i (72 kDa, Protein from Thermus thermophilus HB8)
- Membrane-embedded vo domain (260 kDa, Complex from Thermus thermophilus HB8)
- V-type atp synthase, subunit (vapc-therm) (13 kDa, Protein from Thermus thermophilus HB8)
- V-type atp synthase, subunit k (9 kDa, Protein from Thermus thermophilus HB8)