Resolution: 2.08 Å
EM Method: Helical reconstruction
Fitted PDBs: 9iwq
Q-score: 0.716
Waraich K, Makino F, Miyata T, Kinoshita M, Minamino T, Namba K
To Be Published
Cryo-EM structure of KpFtsZ-monobody double helical tube
Resolution: 2.67 Å
EM Method: Helical reconstruction
Fitted PDBs: 8h1o
Q-score: 0.621
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Monobody (Complex from Homo sapiens)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Cryo-em structure of kpftsz-monobody double helical tube (Complex)
- Mb(ec/kpftsz_s1) (9 kDa, Protein from Homo sapiens)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Cryo-EM structure of KpFtsZ single filament
Resolution: 3.03 Å
EM Method: Helical reconstruction
Fitted PDBs: 8ibn
Q-score: 0.36
Fujita J, Amesaka H, Yoshizawa T, Hibino K, Kamimura N, Kuroda N, Konishi T, Kato Y, Hara M, Inoue T, Namba K, Tanaka SI, Matsumura H
Nat Commun (2023) 14 pp. 4073-4073 [ Pubmed: 37429870 DOI: doi:10.1038/s41467-023-39807-5 ]
- Cryo-em structure of kpftsz single filament (Complex)
- Kpftsz (Complex from Klebsiella pneumoniae)
- Potassium ion (39 Da, Ligand)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Cell division protein ftsz (40 kDa, Protein from Klebsiella pneumoniae)
Resolution: 3.56 Å
EM Method: Helical reconstruction
Fitted PDBs: 6jy0
Q-score: 0.333
Yamaguchi T, Toma S, Terahara N, Miyata T, Ashihara M, Minamino T, Namba K, Kato T
Biomolecules (2020) 10 [ Pubmed: 32041169 DOI: doi:10.3390/biom10020246 ]
The 7 angstrom resolution CryoEM map of the bacterial flagellar polyrod
Resolution: 7.4 Å
EM Method: Helical reconstruction
Fitted PDBs: 5wrh
Q-score: 0.155
Fujii T, Kato T, Hiraoka KD, Miyata T, Minamino T, Chevance FF, Hughes KT, Namba K
Nat Commun (2017) 8 pp. 14276-14276 [ Pubmed: 28120828 DOI: doi:10.1038/ncomms14276 ]
The structure of rabbit skeletal muscle actomyosin rigor complex at 5.2 angstrom.
Resolution: 5.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 5h53
Q-score: 0.114
Nat Commun (2017) 8 pp. 13969-13969 [ Pubmed: 28067235 DOI: doi:10.1038/ncomms13969 ]
- Skeletal muscle myosin heavy chain myhc-eo/iil (96 kDa, Protein from Rabbit)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin, alpha skeletal muscle (41 kDa, Protein from Rabbit)
- Myosin regulatory light chain 2, skeletal muscle isoform type 1 (16 kDa, Protein from Rabbit)
- Myosin light chain 1/3, skeletal muscle isoform (17 kDa, Protein from Rabbit)
- Actomyosin rigor complex (Complex from Oryctolagus cuniculus)
CryoEM map of ParM filament at 7.2 Angstrom resolution
Resolution: 7.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 4a6j
Q-score: 0.095
Gayathri P, Fujii T, Moller-Jensen J, van den Ent F, Namba K, Lowe J
Science (2012) 338 pp. 1334-1337 [ DOI: doi:10.1126/science.1229091 Pubmed: 23112295 ]
- Parm filament (Sample)
- Plasmid segregation protein parm (36 kDa, Protein from Escherichia coli)
Direct visualization of secondary structures of F-actin by electron cryomicroscopy
Resolution: 6.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 3mfp
Q-score: 0.14
Fujii T, Iwane AH, Yanagida T, Namba K
Nature (2010) 467 pp. 724-728 [ Pubmed: 20844487 DOI: doi:10.1038/nature09372 ]
- F-actin (Sample)
- F-actin (Protein from unidentified)
A partial atomic structure for the flagellar hook of Salmonella typhimurium.
Resolution: 9.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 2bgy, 2bgz
Q-score: -0.0065
Shaikh TR, Thomas DR, Chen JZ, Samatey FA, Matsunami H, Imada K, Namba K, Derosier DJ
PNAS (2005) 102 pp. 1023-1028 [ Pubmed: 15657146 DOI: doi:10.1073/pnas.0409020102 ]