SARS-CoV-2 S-RBD + Fab 54042-4
Resolution: 2.69 Å
EM Method: Single-particle
Fitted PDBs: 7t01
Q-score: 0.463
Kramer KJ, Johnson NV, Shiakolas AR, Suryadevara N, Periasamy S, Raju N, Williams JK, Wrapp D, Zost SJ, Walker LM, Wall SC, Holt CM, Hsieh CL, Sutton RE, Paulo A, Nargi RS, Davidson E, Doranz BJ, Crowe Jr JE, Bukreyev A, Carnahan RH, McLellan JS, Georgiev IS
Cell Rep (2021) 37 pp. 109784-109784 [ DOI: doi:10.1016/j.celrep.2021.109784 Pubmed: 34592170 ]
- 54042-4 fab - heavy chain (13 kDa, Protein from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 54042-4 fab - light chain (11 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 s-ecd with 54042-4 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
EBOV GP bound to rEBOV-442 and rEBOV-515 Fabs
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7m8l
Q-score: 0.433
Gilchuk P, Murin CD, Cross RW, Ilinykh PA, Huang K, Kuzmina N, Borisevich V, Agans KN, Geisbert JB, Zost SJ, Nargi RS, Sutton RE, Suryadevara N, Bombardi RG, Carnahan RH, Bukreyev A, Geisbert TW, Ward AB, Crowe Jr JE
Cell (2021) 184 pp. 5593-5607.e18 [ Pubmed: 34715022 DOI: doi:10.1016/j.cell.2021.09.035 ]
- Virion spike glycoprotein 2 (22 kDa, Protein from Ebola virus)
- Rebov-442 fab heavy chain (25 kDa, Protein from Homo sapiens)
- Rebov-515 fab light chain (23 kDa, Protein from Homo sapiens)
- Complex of mucin deleted ebola virus gp (makona variant) bound to rebov-442 and rebov-515 fabs (Complex from Ebola virus)
- Rebov-442 fab light chain (23 kDa, Protein from Homo sapiens)
- Rebov-515 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Virion spike glycoprotein 1 (34 kDa, Protein from Ebola virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2489 (NTD)
Suryadevara N, Shrihari S, Gilchuk P, VanBlargan LA, Binshtein E, Zost SJ, Nargi RS, Sutton RE, Winkler ES, Chen EC, Fouch ME, Davidson E, Doranz BJ, Carnahan RH, Thackray LB, Diamond MS, Crowe JE
bioRxiv (2021) [ Pubmed: 33501445 DOI: doi:10.1101/2021.01.19.427324 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2676 (NTD)
Suryadevara N, Shrihari S, Gilchuk P, VanBlargan LA, Binshtein E, Zost SJ, Nargi RS, Sutton RE, Winkler ES, Chen EC, Fouch ME, Davidson E, Doranz BJ, Carnahan RH, Thackray LB, Diamond MS, Crowe JE
bioRxiv (2021) [ Pubmed: 33501445 DOI: doi:10.1101/2021.01.19.427324 ]
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2082
Greaney AJ, Starr TN, Gilchuk P, Zost SJ, Binshtein E, Loes AN, Hilton SK, Huddleston J, Eguia R, Crawford KHD, Dingens AS, Nargi RS, Sutton RE, Suryadevara N, Rothlauf PW, Liu Z, Whelan SPJ, Carnahan RH, Crowe Jr JE, Bloom JD
Cell Host Microbe (2021) 29 pp. 44-57.e9 [ DOI: doi:10.1016/j.chom.2020.11.007 Pubmed: 33259788 ]
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2479
Greaney AJ, Starr TN, Gilchuk P, Zost SJ, Binshtein E, Loes AN, Hilton SK, Huddleston J, Eguia R, Crawford KHD, Dingens AS, Nargi RS, Sutton RE, Suryadevara N, Rothlauf PW, Liu Z, Whelan SPJ, Carnahan RH, Crowe Jr JE, Bloom JD
Cell Host Microbe (2021) 29 pp. 44-57.e9 [ DOI: doi:10.1016/j.chom.2020.11.007 Pubmed: 33259788 ]
Negative stain EM map of SARS-COV-2 spike protein open RBD (trimer) with Fab COV2-2096
Greaney AJ, Starr TN, Gilchuk P, Zost SJ, Binshtein E, Loes AN, Hilton SK, Huddleston J, Eguia R, Crawford KHD, Dingens AS, Nargi RS, Sutton RE, Suryadevara N, Rothlauf PW, Liu Z, Whelan SPJ, Carnahan RH, Crowe Jr JE, Bloom JD
Cell Host Microbe (2021) 29 pp. 44-57.e9 [ DOI: doi:10.1016/j.chom.2020.11.007 Pubmed: 33259788 ]
Negative stain EM map of SARS-COV-2 spike protein (trimer) with Fab COV2-2832
Greaney AJ, Starr TN, Gilchuk P, Zost SJ, Binshtein E, Loes AN, Hilton SK, Huddleston J, Eguia R, Crawford KHD, Dingens AS, Nargi RS, Sutton RE, Suryadevara N, Rothlauf PW, Liu Z, Whelan SPJ, Carnahan RH, Crowe Jr JE, Bloom JD
Cell Host Microbe (2021) 29 pp. 44-57.e9 [ DOI: doi:10.1016/j.chom.2020.11.007 Pubmed: 33259788 ]
Negative stain EM map of SARS CoV-2 spike protein (trimer)
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]
Negative stain EM map of SARS-CoV-2 spike protein (trimer) with Fab COV2-2165
Zost SJ, Gilchuk P, Case JB, Binshtein E, Chen RE, Nkolola JP, Schafer A, Reidy JX, Trivette A, Nargi RS, Sutton RE, Suryadevara N, Martinez DR, Williamson LE, Chen EC, Jones T, Day S, Myers L, Hassan AO, Kafai NM, Winkler ES, Fox JM, Shrihari S, Mueller BK, Meiler J, Chandrashekar A, Mercado NB, Steinhardt JJ, Ren K, Loo YM, Kallewaard NL, McCune BT, Keeler SP, Holtzman MJ, Barouch DH, Gralinski LE, Baric RS, Thackray LB, Diamond MS, Carnahan RH, Crowe Jr JE
Nature (2020) 584 pp. 443-449 [ Pubmed: 32668443 DOI: doi:10.1038/s41586-020-2548-6 ]