ParM present of genome of Desufitobacterium hafniense - Dc-cParM1
Resolution: 4.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8x1i
Q-score: 0.363
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Parm present of genome of desufitobacterium hafniense - dh-cparm1 (40 kDa, Protein from Desulfitobacterium hafniense Y51)
- Magnesium ion (24 Da, Ligand)
- Dh-cparm1 (405 kDa, Cellular component from Desulfitobacterium hafniense Y51)
Cryo-EM structure of the Agrobacterium T-pilus
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fai
Q-score: 0.557
Kreida S, Narita A, Johnson MD, Tocheva EI, Das A, Ghosal D, Jensen GJ
Structure (2023) 31 pp. 385-394.e4 [ DOI: doi:10.1016/j.str.2023.02.005 Pubmed: 36870333 ]
- Protein virb2 (12 kDa, Protein from Agrobacterium tumefaciens)
- (7z,19r,22s,25r)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9z)-octadec-9-enoate (746 Da, Ligand)
- Virb2 (Cellular component from Agrobacterium tumefaciens)
- T-pilus (2 MDa, Complex from Agrobacterium tumefaciens)
- Phosphatidylglycerol 16:1/18:1 (Cellular component from Agrobacterium tumefaciens)
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x54
Q-score: 0.375
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cbg-parm filament with adp (Complex from Clostridium botulinum)
- Magnesium ion (24 Da, Ligand)
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum Bf)
A CBg-ParM filament with GTP and a short incubation time
Resolution: 8.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x55
Q-score: 0.168
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x56
Q-score: 0.486
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Cbg-parm filament with gdp (Complex from Clostridium botulinum)
- Magnesium ion (24 Da, Ligand)
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum Bf)
A CBg-ParM filament with GTP or GDPPi
Resolution: 6.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x59
Q-score: 0.189
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cbg-parm filament with gtp or gdppi (Complex from Clostridium botulinum)
Akil C, Ali S, Tran LT, Gaillard J, Li W, Hayashida K, Hirose M, Kato T, Oshima A, Fujishima K, Blanchoin L, Narita A, Robinson RC
Sci Adv (2022) 8 pp. eabm2225-eabm2225 [ DOI: doi:10.1126/sciadv.abm2225 Pubmed: 35333570 ]
Akil C, Ali S, Tran LT, Gaillard J, Li W, Hayashida K, Hirose M, Kato T, Oshima A, Fujishima K, Blanchoin L, Narita A, Robinson RC
Sci Adv (2022) 8 pp. eabm2225-eabm2225 [ DOI: doi:10.1126/sciadv.abm2225 Pubmed: 35333570 ]
Simplified Alpha-Carboxysome, T=3
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7ckb
Q-score: 0.591