Cryo-EM structure of the Agrobacterium T-pilus
Resolution: 3.0 Å
EM Method: Helical reconstruction
Fitted PDBs: 8fai
Q-score: 0.557
Kreida S, Narita A, Johnson MD, Tocheva EI, Das A, Ghosal D, Jensen GJ
Structure (2023) 31 pp. 385-394.e4 [ DOI: doi:10.1016/j.str.2023.02.005 Pubmed: 36870333 ]
- Phosphatidylglycerol 16:1/18:1 (Cellular component from Agrobacterium tumefaciens)
- (7z,19r,22s,25r)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9z)-octadec-9-enoate (746 Da, Ligand)
- Protein virb2 (12 kDa, Protein from Agrobacterium tumefaciens)
- T-pilus (2 MDa, Complex from Agrobacterium tumefaciens)
- Virb2 (Cellular component from Agrobacterium tumefaciens)
Resolution: 3.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x54
Q-score: 0.375
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum Bf)
- Magnesium ion (24 Da, Ligand)
- Cbg-parm filament with adp (Complex from Clostridium botulinum)
A CBg-ParM filament with GTP and a short incubation time
Resolution: 8.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x55
Q-score: 0.168
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
Resolution: 3.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x56
Q-score: 0.486
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Cbg-parm filament with gdp (Complex from Clostridium botulinum)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum Bf)
A CBg-ParM filament with GTP or GDPPi
Resolution: 6.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 7x59
Q-score: 0.189
Koh A, Ali S, Popp D, Tanaka K, Kitaoku Y, Miyazaki N, Iwasaki K, Mitsuoka K, Robert R, Narita A
To Be Published
- Parm/stba family protein (32 kDa, Protein from Clostridium botulinum)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Cbg-parm filament with gtp or gdppi (Complex from Clostridium botulinum)
Resolution: 4.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 6izr
Q-score: 0.23
Koh F, Narita A, Lee LJ, Tanaka K, Tan YZ, Dandey VP, Popp D, Robinson RC
Nat Commun (2019) 10 pp. 2856-2856 [ Pubmed: 31253774 DOI: doi:10.1038/s41467-019-10779-9 ]
- Putative plasmid segregation protein parm (39 kDa, Protein from Clostridium botulinum Prevot 594)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Parm filament coded on pcbh plasmid from clostridium botulinum (Complex from Clostridium botulinum F str. 230613)
Resolution: 4.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 6izv
Q-score: 0.362
Koh F, Narita A, Lee LJ, Tanaka K, Tan YZ, Dandey VP, Popp D, Robinson RC
Nat Commun (2019) 10 pp. 2856-2856 [ Pubmed: 31253774 DOI: doi:10.1038/s41467-019-10779-9 ]
- Putative plasmid segregation protein parm (39 kDa, Protein from Clostridium botulinum Prevot 594)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Parm filament coded on pcbh plasmid from clostridium botulinum (Complex from Clostridium botulinum F str. 230613)
Resolution: 19.7 Å
EM Method: Helical reconstruction
Fitted PDBs: 4apw
Q-score: 0.058
Popp D, Narita A, Lee LJ, Ghoshdastider U, Xue B, Srinivasan R, Balasubramanian MK, Tanaka T, Robinson RC
J Biol Chem (2012) 287 pp. 21121-21129 [ Pubmed: 22514279 DOI: doi:10.1074/jbc.M112.341016 ]
Popp D, Narita A, Oda T, Fujisawa T, Matsuo H, Nitanai Y, Iwasa M, Maeda K, Onishi H, Maeda Y
EMBO J (2008) 27 pp. 570-579 [ DOI: doi:10.1038/sj.emboj.7601978 Pubmed: 18188150 ]
- Parm filament (35 kDa, Sample)
- Parm (Protein from Escherichia coli)