Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8f3c
Q-score: 0.419
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Cryo-em consensus structure of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna (39-mer) (11 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Escherichia coli)
- Dna (38-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g00
Q-score: 0.419
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Cryo-em structure of 3dva component 0 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand . (420 kDa, Complex from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g1s
Q-score: 0.389
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit alpha, dna-directed rna polymerase subunit beta, dna-directed rna polymerase subunit beta', dna-directed rna polymerase subunit omega, dna (Complex from Escherichia coli)
- Rna (Complex from Bacillus subtilis)
- Rna (47-mer) (15 kDa, RNA from Bacillus subtilis)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (152 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Cryo-em structure of 3dva component 1 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g2w
Q-score: 0.368
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Cryo-em structure of 3dva component 2 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8g4w
Q-score: 0.338
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 7-deaza-7-aminomethyl-guanine (179 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Cryo-em consensus structure of escherichia coli que-pec (paused elongation complex) rna polymerase plus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8g7e
Q-score: 0.294
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Magnesium ion (24 Da, Ligand)
- 7-deaza-7-aminomethyl-guanine (179 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Cryo-em structure of 3dva component 0 of escherichia coli que-pec (paused elongation complex) rna polymerase plus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8g8z
Q-score: 0.407
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ Pubmed: 37264140 DOI: doi:10.1038/s41594-023-01002-x ]
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 7-deaza-7-aminomethyl-guanine (179 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Rna (48-mer) (15 kDa, RNA from Escherichia coli)
- Cryo-em structure of 3dva component 1 of escherichia coli que-pec (paused elongation complex) rna polymerase plus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli)
Negative stain EM map of Pan-EBOV antibody 520 Fab in complex with EBOV GPdMuc trimer
Gilchuk P, Kuzmina N, Ilinykh PA, Huang K, Gunn BM, Bryan A, Davidson E, Doranz BJ, Turner HL, Fusco ML, Bramble MS, Hoff NA, Binshtein E, Kose N, Flyak AI, Flinko R, Orlandi C, Carnahan R, Parrish EH, Sevy AM, Bombardi RG, Singh PK, Mukadi P, Muyembe-Tamfum JJ, Ohi MD, Saphire EO, Lewis GK, Alter G, Ward AB, Rimoin AW, Bukreyev A, Crowe Jr JE
Immunity (2018) 49 pp. 363-374.e10 [ DOI: doi:10.1016/j.immuni.2018.06.018 Pubmed: 30029854 ]
Negative stain EM map of Pan-EBOV antibody 515 Fab in complex with EBOV GPdMuc trimer
Gilchuk P, Kuzmina N, Ilinykh PA, Huang K, Gunn BM, Bryan A, Davidson E, Doranz BJ, Turner HL, Fusco ML, Bramble MS, Hoff NA, Binshtein E, Kose N, Flyak AI, Flinko R, Orlandi C, Carnahan R, Parrish EH, Sevy AM, Bombardi RG, Singh PK, Mukadi P, Muyembe-Tamfum JJ, Ohi MD, Saphire EO, Lewis GK, Alter G, Ward AB, Rimoin AW, Bukreyev A, Crowe Jr JE
Immunity (2018) 49 pp. 363-374.e10 [ DOI: doi:10.1016/j.immuni.2018.06.018 Pubmed: 30029854 ]