Cryo-EM structure of the hydrazine dehydrogenase from Kuenia stuttgartiensis in the octameric state
Akram M, Dietl A, Mersdorf U, Prinz S, Maalcke W, Keltjens J, Ferousi C, de Almeida NM, Reimann J, Kartal B, Jetten MSM, Parey K, Barends TRM
Sci Adv (2019) 5 pp. eaav4310-eaav4310 [ DOI: doi:10.1126/sciadv.aav4310 Pubmed: 31001586 ]
Akram M, Dietl A, Mersdorf U, Prinz S, Maalcke W, Keltjens J, Ferousi C, de Almeida NM, Reimann J, Kartal B, Jetten MSM, Parey K, Barends TRM
Sci Adv (2019) 5 pp. eaav4310-eaav4310 [ DOI: doi:10.1126/sciadv.aav4310 Pubmed: 31001586 ]
Cryo-EM structure of the hydrazine dehydrogenase from Kuenia stuttgartiensis in the decameric state
Akram M, Dietl A, Mersdorf U, Prinz S, Maalcke W, Keltjens J, Ferousi C, de Almeida NM, Reimann J, Kartal B, Jetten MSM, Parey K, Barends TRM
Sci Adv (2019) 5 pp. eaav4310-eaav4310 [ DOI: doi:10.1126/sciadv.aav4310 Pubmed: 31001586 ]
Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 6gcs
Q-score: 0.371
Parey K, Brandt U, Xie H, Mills DJ, Siegmund K, Vonck J, Kuehlbrandt W, Zickermann V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39213 Pubmed: 30277212 ]
- Tyky subunit (nuim) (25 kDa, Protein from Yarrowia lipolytica)
- Nuym subunit (18 kDa, Protein from Yarrowia lipolytica)
- Cardiolipin (1 kDa, Ligand)
- Nidm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Ni8m subunit (9 kDa, Protein from Yarrowia lipolytica)
- 24-kda subunit (nuhm) (27 kDa, Protein from Yarrowia lipolytica)
- Nd4 subunit (nu4m) (54 kDa, Protein from Yarrowia lipolytica)
- Nd4l subunit (nulm) (9 kDa, Protein from Yarrowia lipolytica)
- 75-kda protein (nuam) (79 kDa, Protein from Yarrowia lipolytica)
- Nuzm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Flavin mononucleotide (456 Da, Ligand)
- Unknown subunit (4 kDa, Protein from Yarrowia lipolytica)
- Nesm subunit (13 kDa, Protein from Yarrowia lipolytica)
- Nd5 subunit (nu5m) (73 kDa, Protein from Yarrowia lipolytica)
- Acpm2 subunit (14 kDa, Protein from Yarrowia lipolytica)
- Niam subunit (8 kDa, Protein from Yarrowia lipolytica)
- Nb2m subunit (6 kDa, Protein from Yarrowia lipolytica)
- Nd1 subunit (nu1m) (38 kDa, Protein from Yarrowia lipolytica)
- Nd2 subunit (nu2m) (53 kDa, Protein from Yarrowia lipolytica)
- Nd3 subunit (nu3m) (14 kDa, Protein from Yarrowia lipolytica)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- 51-kda protein (nubm) (53 kDa, Protein from Yarrowia lipolytica)
- Nupm subunit (19 kDa, Protein from Yarrowia lipolytica)
- Nd6 subunit (nu6m) (20 kDa, Protein from Yarrowia lipolytica)
- Nb5m subunit (10 kDa, Protein from Yarrowia lipolytica)
- Mitochondrial nadh:ubiquinone oxidoreductase (963 MDa, Complex from Yarrowia lipolytica)
- Ni2m subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nuem subunit (42 kDa, Protein from Yarrowia lipolytica)
- Nimm subunit (9 kDa, Protein from Yarrowia lipolytica)
- 49-kda protein (nucm) (52 kDa, Protein from Yarrowia lipolytica)
- Nb4m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nb6m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Numm subunit (15 kDa, Protein from Yarrowia lipolytica)
- Nuxm subunit (18 kDa, Protein from Yarrowia lipolytica)
- N7bm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Zinc ion (65 Da, Ligand)
- Nuum subunit (3 kDa, Protein from Yarrowia lipolytica)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Psst subunit (nukm) (23 kDa, Protein from Yarrowia lipolytica)
- Nb8m subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nipm subunit (10 kDa, Protein from Yarrowia lipolytica)
- Nufm subunit (16 kDa, Protein from Yarrowia lipolytica)
- 30-kda protein (nugm) (32 kDa, Protein from Yarrowia lipolytica)
- Ni9m subunit (7 kDa, Protein from Yarrowia lipolytica)
- Iron/sulfur cluster (351 Da, Ligand)
- Nujm subunit (20 kDa, Protein from Yarrowia lipolytica)
- Nunm subunit (7 kDa, Protein from Yarrowia lipolytica)
- Acpm1 subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nebm subunit (5 kDa, Protein from Yarrowia lipolytica)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Cryo-EM structure of a respiratory complex I mutant lacking NDUFS4
Resolution: 4.04 Å
EM Method: Single-particle
Fitted PDBs: 6rfs
Q-score: 0.342
Parey K, Haapanen O, Sharma V, Kofeler H, Zullig T, Prinz S, Siegmund K, Wittig I, Mills DJ, Vonck J, Kuhlbrandt W, Zickermann V
Sci Adv (2019) 5 pp. eaax9484-eaax9484 [ Pubmed: 31844670 DOI: doi:10.1126/sciadv.aax9484 ]
- Subunit nuam of nadh:ubiquinone oxidoreductase (complex i) (79 kDa, Protein from Yarrowia lipolytica)
- Subunit nucm of nadh:ubiquinone oxidoreductase (complex i) (52 kDa, Protein from Yarrowia lipolytica)
- Subunit nipm of nadh:ubiquinone oxidoreductase (complex i) (10 kDa, Protein from Yarrowia lipolytica)
- Subunit nukm of nadh:ubiquinone oxidoreductase (complex i) (23 kDa, Protein from Yarrowia lipolytica)
- Subunit ni8m of nadh:ubiquinone oxidoreductase (complex i) (9 kDa, Protein from Yarrowia lipolytica)
- Subunit nb4m of protein nadh:ubiquinone oxidoreductase (complex i) (14 kDa, Protein from Yarrowia lipolytica)
- Mitochondrial nadh:ubiquinone oxidoreductase (1 MDa, Complex from Yarrowia lipolytica)
- Subunit nujm of nadh:ubiquinone oxidoreductase (complex i) (20 kDa, Protein from Yarrowia lipolytica)
- Subunit numm of nadh:ubiquinone oxidoreductase (complex i) (15 kDa, Protein from Yarrowia lipolytica)
- Acyl carrier protein acpm1 of nadh:ubiquinone oxidoreductase (complex i) (12 kDa, Protein from Yarrowia lipolytica)
- Subunit nuvm of nadh:ubiquinone oxidoreductase (complex i) (7 kDa, Protein from Yarrowia lipolytica)
- Subunit nugm of nadh:ubiquinone oxidoreductase (complex i) (32 kDa, Protein from Yarrowia lipolytica)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Subunit nu1m of nadh:ubiquinone oxidoreductase (complex i) (38 kDa, Protein from Yarrowia lipolytica)
- Subunit nesm of nadh:ubiquinone oxidoreductase (complex i) (28 kDa, Protein from Yarrowia lipolytica)
- Flavin mononucleotide (456 Da, Ligand)
- Subunit niam of nadh:ubiquinone oxidoreductase (complex i) (17 kDa, Protein from Yarrowia lipolytica)
- Subunit nupm of nadh:ubiquinone oxidoreductase (complex i) (19 kDa, Protein from Yarrowia lipolytica)
- Acyl carrier protein acpm2 of nadh:ubiquinone oxidoreductase (complex i) (14 kDa, Protein from Yarrowia lipolytica)
- Subunit nufm of nadh:ubiquinone oxidoreductase (complex i) (16 kDa, Protein from Yarrowia lipolytica)
- Subunit nuem of nadh:ubiquinone oxidoreductase (complex i) (42 kDa, Protein from Yarrowia lipolytica)
- Subunit nb8m of nadh:ubiquinone oxidoreductase (complex i) (11 kDa, Protein from Yarrowia lipolytica)
- Subunit nb5m of nadh:ubiquinone oxidoreductase (complex i) (10 kDa, Protein from Yarrowia lipolytica)
- Subunit nuhm of nadh:ubiquinone oxidoreductase (complex i) (27 kDa, Protein from Yarrowia lipolytica)
- Subunit nimm of nadh:ubiquinone oxidoreductase (complex i) (9 kDa, Protein from Yarrowia lipolytica)
- Subunit n7bm of nadh:ubiquinone oxidoreductase (complex i) (16 kDa, Protein from Yarrowia lipolytica)
- Subunit nuxm of nadh:ubiquinone oxidoreductase (complex i) (18 kDa, Protein from Yarrowia lipolytica)
- Subunit ni2m of nadh:ubiquinone oxidoreductase (complex i) (12 kDa, Protein from Yarrowia lipolytica)
- Subunit nunm of nadh:ubiquinone oxidoreductase (complex i) (13 kDa, Protein from Yarrowia lipolytica)
- Subunit nulm of nadh:ubiquinone oxidoreductase (complex i) (9 kDa, Protein from Yarrowia lipolytica)
- Subunit nu6m of nadh:ubiquinone oxidoreductase (complex i) (20 kDa, Protein from Yarrowia lipolytica)
- Subunit nuim of nadh:ubiquinone oxidoreductase (complex i) (25 kDa, Protein from Yarrowia lipolytica)
- Subunit ni9m of nadh:ubiquinone oxidoreductase (complex i) (8 kDa, Protein from Yarrowia lipolytica)
- Zinc ion (65 Da, Ligand)
- Subunit nubm of nadh:ubiquinone oxidoreductase (complex i) (53 kDa, Protein from Yarrowia lipolytica)
- Subunit nidm of nadh:ubiquinone oxidoreductase (complex i) (11 kDa, Protein from Yarrowia lipolytica)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- Subunit nu5m of nadh:ubiquinone oxidoreductase (complex i) (73 kDa, Protein from Yarrowia lipolytica)
- Subunit nebm of nadh:ubiquinone oxidoreductase (complex i) (8 kDa, Protein from Yarrowia lipolytica)
- Subunit nuum of nadh:ubiquinone oxidoreductase (complex i) (9 kDa, Protein from Yarrowia lipolytica)
- Subunit nb2m of nadh:ubiquinone oxidoreductase (complex i) (6 kDa, Protein from Yarrowia lipolytica)
- Subunit nb6m of nadh:ubiquinone oxidoreductase (complex i) (14 kDa, Protein from Yarrowia lipolytica)
- Subunit nu2m of nadh:ubiquinone oxidoreductase (complex i) (53 kDa, Protein from Yarrowia lipolytica)
- Subunit nuzm of nadh:ubiquinone oxidoreductase (complex i) (19 kDa, Protein from Yarrowia lipolytica)
- Subunit nu4m of nadh:ubiquinone oxidoreductase (complex i) (54 kDa, Protein from Yarrowia lipolytica)
- Subunit nu3m of nadh:ubiquinone oxidoreductase (complex i) (14 kDa, Protein from Yarrowia lipolytica)
- Iron/sulfur cluster (351 Da, Ligand)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Respiratory complex I of Yarrowia lipolytica
D'Imprima E, Mills DJ, Parey K, Brandt U, Kuhlbrandt W, Zickermann V, Vonck J
Biochim Biophys Acta (2016) 1857 pp. 1935-1942 [ DOI: doi:10.1016/j.bbabio.2016.09.014 Pubmed: 27693469 ]
- Nadh:ubiquinone oxidoreductase (1 MDa, Complex from Yarrowia lipolytica)
Respiratory complex I of Yarrowia lipolytica with sulfur transferase subunit ST1 bound
D'Imprima E, Mills DJ, Parey K, Brandt U, Kuhlbrandt W, Zickermann V, Vonck J
Biochim Biophys Acta (2016) 1857 pp. 1935-1942 [ DOI: doi:10.1016/j.bbabio.2016.09.014 Pubmed: 27693469 ]
- Nadh:ubiquinone oxidoreductase (1 MDa, Complex from Yarrowia lipolytica)