SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8bcz
Q-score: 0.564
Dijokaite-Guraliuc A, Das R, Zhou D, Ginn HM, Liu C, Duyvesteyn HME, Huo J, Nutalai R, Supasa P, Selvaraj M, de Silva TI, Plowright M, Newman TAH, Hornsby H, Mentzer AJ, Skelly D, Ritter TG, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Roemer C, Peacock TP, Paterson NG, Williams MA, Hall DR, Fry EE, Mongkolsapaya J, Ren J, Stuart DI, Screaton GR
Cell Rep (2023) 42 pp. 112271-112271 [ DOI: doi:10.1016/j.celrep.2023.112271 Pubmed: 36995936 ]
- Antibody chains (Complex from Homo sapiens)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2 delta variant receptor binding domain (Complex from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (13 kDa, Protein from Homo sapiens)
- Ba.2-23 heavy chain (12 kDa, Protein from Homo sapiens)
- Ey6a light chain (11 kDa, Protein from Homo sapiens)
- Ba.2-36 heavy chain (13 kDa, Protein from Homo sapiens)
- Ba.2-36 light chain (11 kDa, Protein from Homo sapiens)
- Covox-45 light chain (11 kDa, Protein from Homo sapiens)
- Covox-45 heavy chain (24 kDa, Protein from Homo sapiens)
- Ba.2-23 light chain (11 kDa, Protein from Homo sapiens)
- Complex of sars-cov2 delta variant receptor binding domain with 4 fabs (Complex)
OMI-42 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr7
Q-score: 0.258
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Omi-42 fab (Complex from Homo sapiens)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-42 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-42 light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Omi-42 heavy chain (13 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Tequatrovirus T4)
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE RBD (local refinement)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zr8
Q-score: 0.47
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
- Omi-38 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)
OMI-2 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE GLYCOPROTEIN
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7zr9
Q-score: 0.259
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- Omi-2 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-2 fab (Complex from Homo sapiens)
- Omi-2 fab light chain (11 kDa, Protein from Homo sapiens)
- Omi-2 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
OMI-38 FAB IN COMPLEX WITH SARS-COV-2 BETA SPIKE
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zrc
Q-score: 0.394
Nutalai R, Zhou D, Tuekprakhon A, Ginn HM, Supasa P, Liu C, Huo J, Mentzer AJ, Duyvesteyn HME, Dijokaite-Guraliuc A, Skelly D, Ritter TG, Amini A, Bibi S, Adele S, Johnson SA, Constantinides B, Webster H, Temperton N, Klenerman P, Barnes E, Dunachie SJ, Crook D, Pollard AJ, Lambe T, Goulder P, Paterson NG, Williams MA, Hall DR, Mongkolsapaya J, Fry EE, Dejnirattisai W, Ren J, Stuart DI, Screaton GR
Cell (2022) 185 pp. 2116-2131.e18 [ DOI: doi:10.1016/j.cell.2022.05.014 Pubmed: 35662412 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 beta spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Omi-38 fab in complex with sars-cov-2 beta spike glycoprotein (Complex)
- Omi-38 fab light chain (11 kDa, Protein from Homo sapiens)
- Omi-38 fab (Complex from Homo sapiens)
- Spike glycoprotein,fibritin (141 kDa, Protein from Enterobacteria phage T4)
- Omi-38 fab heavy chain (12 kDa, Protein from Homo sapiens)
Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6zdg
Q-score: 0.237
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike ectodomain with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)
Association of two complexes of largely structurally disordered Spike ectodomain with bound EY6A Fab
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6zfo
Q-score: 0.191
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike ectodomain with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike protein s1 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)
Structure of the prefusion SARS-CoV-2 spike glycoprotein
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6z97
Q-score: 0.442
Huo J, Zhao Y, Ren J, Zhou D, Duyvesteyn HME, Ginn HM, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Coombes N, Bewley KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll M, Townsend A, Fry EE, Owens RJ, Stuart DI
Cell Host Microbe (2020) 28 pp. 445-454.e6 [ Pubmed: 32585135 DOI: doi:10.1016/j.chom.2020.06.010 ]
SARS-CoV-2 Spike glycoprotein in complex with a neutralizing antibody EY6A Fab
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6zdh
Q-score: 0.364
Zhou D, Duyvesteyn HME, Chen CP, Huang CG, Chen TH, Shih SR, Lin YC, Cheng CY, Cheng SH, Huang YC, Lin TY, Ma C, Huo J, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Donat RF, Godwin K, Buttigieg KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll MW, Gilbert-Jaramillo J, Knight ML, James W, Owens RJ, Naismith JH, Townsend AR, Fry EE, Zhao Y, Ren J, Stuart DI, Huang KA
Nat Struct Mol Biol (2020) 27 pp. 950-958 [ Pubmed: 32737466 DOI: doi:10.1038/s41594-020-0480-y ]
- Complex of sars-cov-2 spike glycoprotein with ey6a fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sars-cov-2 neutralizing antibody ey6a fab (Complex from human)
- Ey6a light chain (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Ey6a heavy chain (24 kDa, Protein from Homo sapiens)
Structure of the SARS-CoV-2 spike S1 protein in complex with CR3022 Fab
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6yor
Q-score: 0.224
Huo J, Zhao Y, Ren J, Zhou D, Duyvesteyn HME, Ginn HM, Carrique L, Malinauskas T, Ruza RR, Shah PNM, Tan TK, Rijal P, Coombes N, Bewley KR, Tree JA, Radecke J, Paterson NG, Supasa P, Mongkolsapaya J, Screaton GR, Carroll M, Townsend A, Fry EE, Owens RJ, Stuart DI
Cell Host Microbe (2020) 28 pp. 445-454.e6 [ Pubmed: 32585135 DOI: doi:10.1016/j.chom.2020.06.010 ]
- Spike glycoprotein (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Immunoblobulin heavy chain (Complex from Homo sapiens)
- Rbd (Complex from Severe acute respiratory syndrome coronavirus 2)
- Binary complex of sars-cov-2 spike s1 with cr3022 fab (Complex)
- Igg h chain (24 kDa, Protein from Homo sapiens)
- Immunoblobulin light chain (Complex from Homo sapiens)
- Igg l chain (24 kDa, Protein from Homo sapiens)