ApexGT2 in complex with GT2-d42.16 and RM20A3 Fabs
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 7t9a
Q-score: 0.456
Melzi E, Willis J, Ma K, Lin Y, Kratochvil S, Berndsen ZT, Nair U, Warner J, Steichen J, Pecetta S, Perez M, Kirsch K, Ward AB, Schief W, Batista FD
Immunity (2022) [ ]
- Hiv-1 envelope apexgt2 in complex with pct64_lmca.hl_gt2_d42.16 fab and rm20a3 fab (Complex from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hiv envelope apexgt2 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Gt2-d42.16 fab heavy chain (15 kDa, Protein from Mus musculus)
- Gt2-d42.16 fab light chain (11 kDa, Protein from Mus musculus)
- Hiv envelope apexgt2 gp41 (18 kDa, Protein from Human immunodeficiency virus 1)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
ApexGT5 in complex with GT5-d42.16 and RM20A3 Fabs
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 7t9b
Q-score: 0.438
Melzi E, Willis J, Ma K, Lin Y, Kratochvil S, Berndsen ZT, Nair U, Warner J, Steichen J, Pecetta S, Perez M, Kirsch K, Ward AB, Schief W, Batista FD
Immunity (2022) [ ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Gt5-d42.16 fab light chain (11 kDa, Protein from Mus musculus)
- Gt5-d42.16 fab heavy chain (15 kDa, Protein from Mus musculus)
- Hiv-1 envelope apexgt5 gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt5 in complex with gt5-d42.16 and rm20a3 fabs (Complex from Human immunodeficiency virus 1)
- Hiv-1 envelope apexgt5 gp120 (53 kDa, Protein from Human immunodeficiency virus 1)
- Rm20a3 fab heavy chain (13 kDa, Protein from Macaca mulatta)
- Rm20a3 fab light chain (13 kDa, Protein from Macaca mulatta)
BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding
Resolution: 4.42 Å
EM Method: Single-particle
Fitted PDBs: 6dfg
Q-score: 0.348
Steichen JM, Lin YC, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR
Science (2019) 366 [ DOI: doi:10.1126/science.aax4380 Pubmed: 31672916 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sosip trimer (Complex from Human immunodeficiency virus 1)
- Mature bg18 fragment antigen binding heavy chain (25 kDa, Protein from Homo sapiens)
- Bg505 md39 sosip trimer in complex with mature bg18 fragment antigen binding (570 kDa, Complex)
- Mature bg18 fragment antigen binding light chain (22 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (18 kDa, Protein from Human immunodeficiency virus 1)
- Bg18 fragment (Complex from Homo sapiens)
- Envelope glycoprotein gp160 (53 kDa, Protein from Human immunodeficiency virus 1)
BG505 MD64 N332-GT2 SOSIP trimer in complex with germline-reverted BG18 fragment antigen binding
Resolution: 3.85 Å
EM Method: Single-particle
Fitted PDBs: 6dfh
Q-score: 0.392
Steichen JM, Lin YC, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR
Science (2019) 366 [ DOI: doi:10.1126/science.aax4380 Pubmed: 31672916 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Bg18 fragment antigen (Complex from Homo sapiens)
- Sosip trimer (Complex from Human immunodeficiency virus 1)
- Bg505 md64 n332-gt2 sosip trimer in complex with germline-reverted bg18 fragment antigen binding (570 kDa, Complex)
- Envelope glycoprotein gp160 (18 kDa, Protein from Human immunodeficiency virus 1)
- Germline-reverted bg18 fragment antigen binding light chain (22 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp160 (53 kDa, Protein from Human immunodeficiency virus 1)
- Germline-reverted bg18 fragment antigen binding heavy chain (24 kDa, Protein from Homo sapiens)
Steichen JM, Lin YC, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR
Science (2019) 366 [ DOI: doi:10.1126/science.aax4380 Pubmed: 31672916 ]
- Rm20a3 fragment antigen binding (Complex from Macaca mulatta)
- Rm20a3 fragment antigen binding light chain (Protein from Macaca mulatta)
- Sosip trimer (Complex from Human immunodeficiency virus 1)
- Hmp1 fragment antigen binding (Complex from Homo sapiens)
- Rm20a3 fragment antigen binding heavy chain (Protein from Macaca mulatta)
- Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp1 fragment antigen binding and base-binding rm20a3 fragment antigen binding (720 kDa, Complex)
- Bg18-like precursor hmp1 fragment antigen binding heavy chain (Protein from Homo sapiens)
- Bg505 md64 n332-gt5 sosip (Protein from Human immunodeficiency virus 1)
- Bg18-like precursor hmp1 fragment antigen binding light chain (Protein from Homo sapiens)
Steichen JM, Lin YC, Havenar-Daughton C, Pecetta S, Ozorowski G, Willis JR, Toy L, Sok D, Liguori A, Kratochvil S, Torres JL, Kalyuzhniy O, Melzi E, Kulp DW, Raemisch S, Hu X, Bernard SM, Georgeson E, Phelps N, Adachi Y, Kubitz M, Landais E, Umotoy J, Robinson A, Briney B, Wilson IA, Burton DR, Ward AB, Crotty S, Batista FD, Schief WR
Science (2019) 366 [ DOI: doi:10.1126/science.aax4380 Pubmed: 31672916 ]
- Rm20a3 fragment antigen binding light chain (Protein from Macaca mulatta)
- Bg505 md64 n332-gt5 sosip trimer in complex with bg18-like precursor hmp42 fragment antigen binding and base-binding rm20a3 fragment antigen binding (720 kDa, Complex)
- Bg18-like precursor hmp42 fragment antigen binding light chain (Protein from Homo sapiens)
- Rm20a3 fragment antigen binding heavy chain (Protein from Macaca mulatta)
- Rm20a3 fragment antigen binding (Complex from Macaca mulatta)
- Bg505 md64 n332-gt5 sosip (Protein from Human immunodeficiency virus 1)
- Bg18-like precursor hmp42 fragment antigen binding heavy chain (Protein from Homo sapiens)
- Hmp42 fragment antigen binding (Complex from Homo sapiens)
- Bg505 md64 n332-gt5 sosip trimer (Complex from Human immunodeficiency virus 1)