Cryo-EM structure of Nipah virus L-P polymerase complex
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 9ir3
Q-score: 0.394
Peng Q, Dong Y, Jia M, Liu Q, Bi Y, Qi J, Shi Y
Nat Commun (2024) 15 pp. 10524-10524 [ Pubmed: 39627254 DOI: doi:10.1038/s41467-024-54994-5 ]
- Cryo-em structure of nipah virus l-p polymerase complex (Complex from Nipah virus)
- Rna-directed rna polymerase l (257 kDa, Protein from Nipah virus)
- Phosphoprotein (78 kDa, Protein from Nipah virus)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of Nipah virus L-P (H1165Y) polymerase complex
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 9ir4
Q-score: 0.435
Peng Q, Dong Y, Jia M, Liu Q, Bi Y, Qi J, Shi Y
Nat Commun (2024) 15 pp. 10524-10524 [ Pubmed: 39627254 DOI: doi:10.1038/s41467-024-54994-5 ]
- Cryo-em structure of nipah virus l-p(h1165y) polymerase complex (Complex from Nipah virus)
- Phosphoprotein (78 kDa, Protein from Nipah virus)
- Rna-directed rna polymerase l (257 kDa, Protein from Nipah virus)
- Zinc ion (65 Da, Ligand)
FluPol-NS2 complex (local refinement)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8y7m
Q-score: 0.477
Sun J, Kuai L, Zhang L, Xie Y, Zhang Y, Li Y, Peng Q, Shao Y, Yang Q, Tian WX, Zhu J, Qi J, Shi Y, Deng T, Gao GF
EMBO Rep (2024) 25 pp. 4708-4727 [ Pubmed: 39026012 DOI: doi:10.1038/s44319-024-00208-4 ]
- Ns2 (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Polymerase acidic protein (84 kDa, Protein from Influenza A virus (A/nt/60/1968(H3N2)))
- Nuclear export protein (14 kDa, Protein from Influenza A virus (strain A/Hong Kong/1/1968 H3N2))
- Flupol-ns2 complex (local refinement) (Complex)
- Flupol (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Polymerase basic protein 2 (89 kDa, Protein from Influenza A virus (A/nt/60/1968(H3N2)))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (strain A/Hong Kong/1/1968 H3N2))
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8y7o
Q-score: 0.447
Sun J, Kuai L, Zhang L, Xie Y, Zhang Y, Li Y, Peng Q, Shao Y, Yang Q, Tian WX, Zhu J, Qi J, Shi Y, Deng T, Gao GF
EMBO Rep (2024) 25 pp. 4708-4727 [ Pubmed: 39026012 DOI: doi:10.1038/s44319-024-00208-4 ]
- Ns2 (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Polymerase acidic protein (84 kDa, Protein from Influenza A virus (A/nt/60/1968(H3N2)))
- Nuclear export protein (14 kDa, Protein from Influenza A virus (A/Hong Kong/1/1968(H3N2)))
- Flupol-ns2 complex (hexamer) (Complex)
- Flupol (Complex from Influenza A virus (A/Aichi/2/1968(H3N2)))
- Polymerase basic protein 2 (89 kDa, Protein from Influenza A virus (A/nt/60/1968(H3N2)))
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza A virus (A/Hong Kong/1/1968(H3N2)))
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xb8
Q-score: 0.49
Li C, Jia M, Hao T, Peng Q, Peng R, Chai Y, Shi Y, Song H, Gao GF
J Virol (2024) 98 pp. e0153623-e0153623 [ Pubmed: 38315014 DOI: doi:10.1128/jvi.01536-23 ]
- The structure of asfv a137r (Complex from African swine fever virus)
- A137r (16 kDa, Protein from African swine fever virus)
Cryo-EM structure of SARS-CoV-2 Omicron spike protein (S-6P-RRAR) in complex with S309 fab
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7xco
Q-score: 0.433
Zhao Z, Zhou J, Tian M, Huang M, Liu S, Xie Y, Han P, Bai C, Han P, Zheng A, Fu L, Gao Y, Peng Q, Li Y, Chai Y, Zhang Z, Zhao X, Song H, Qi J, Wang Q, Wang P, Gao GF
Nat Commun (2022) 13 pp. 4958- [ DOI: doi:10.1038/s41467-022-32665-7 ]
- S309 fab light chain (23 kDa, Protein from Homo sapiens)
- S309 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Sars-cov-2 omicron spike protein (Complex from Homo sapiens)
- S309 fab (Complex)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of sars-cov-2 omicron spike protein in complex with s309 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 7y9z
Q-score: 0.365
Zhao Z, Zhou J, Tian M, Huang M, Liu S, Xie Y, Han P, Bai C, Han P, Zheng A, Fu L, Gao Y, Peng Q, Li Y, Chai Y, Zhang Z, Zhao X, Song H, Qi J, Wang Q, Wang P, Gao GF
Nat Commun (2022) 13 pp. 4958-4958 [ DOI: doi:10.1038/s41467-022-32665-7 Pubmed: 36002453 ]
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Processed angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Processed angiotensin-converting enzyme 2 (Complex)
- Spike glycoprotein (Complex from Homo sapiens)
- Cryo-em structure of sars-cov-2 omicron spike protein in complex with human ace2 ectodomain (one-rbd-up state) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ya0
Q-score: 0.327
Zhao Z, Zhou J, Tian M, Huang M, Liu S, Xie Y, Han P, Bai C, Han P, Zheng A, Fu L, Gao Y, Peng Q, Li Y, Chai Y, Zhang Z, Zhao X, Song H, Qi J, Wang Q, Wang P, Gao GF
Nat Commun (2022) 13 pp. 4958-4958 [ DOI: doi:10.1038/s41467-022-32665-7 Pubmed: 36002453 ]
- Processed angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Spike glycoprotein (Complex from Homo sapiens)
- Processed angiotensin-converting enzyme 2 (Complex)
- Cryo-em structure of hace2-bound sars-cov-2 omicron spike protein with l371s, p373s and f375s mutations (local refinement) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7xch
Q-score: 0.31
Zhao Z, Zhou J, Tian M, Huang M, Liu S, Xie Y, Han P, Bai C, Han P, Zheng A, Fu L, Gao Y, Peng Q, Li Y, Chai Y, Zhang Z, Zhao X, Song H, Qi J, Wang Q, Wang P, Gao GF
Nat Commun (2022) 13 pp. 4958- [ DOI: doi:10.1038/s41467-022-32665-7 ]
- Processed angiotensin-converting enzyme 2 (69 kDa, Protein from Homo sapiens)
- Ace2 ectodomain (Complex)
- Sars-cov-2 omicron spike protein (Complex from Homo sapiens)
- Cryo-em structure of sars-cov-2 omicron spike protein in complex with human ace2 ectodomain (two-rbd-up state) (Complex from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Spike glycoprotein (138 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7el9
Q-score: 0.415
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Machupo virus 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z martix protein and 3'-vrna in dimeric form. (580 kDa, Complex from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
- Zinc ion (65 Da, Ligand)
- Machupo virus 3'-vrna promoter (Complex from Machupo mammarenavirus)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase (Complex)