Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8xb8
Q-score: 0.49
Li C, Jia M, Hao T, Peng Q, Peng R, Chai Y, Shi Y, Song H, Gao GF
J Virol (2024) 98 pp. e0153623-e0153623 [ Pubmed: 38315014 DOI: doi:10.1128/jvi.01536-23 ]
- The structure of asfv a137r (Complex from African swine fever virus)
- A137r (16 kDa, Protein from African swine fever virus)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7wwu
Q-score: 0.413
Zhang M, Peng R, Peng Q, Liu S, Li Z, Zhang Y, Song H, Yang J, Xing X, Wang P, Qi J, Gao GF
PNAS (2023) 120 pp. e2215098120-e2215098120 [ Pubmed: 37094126 DOI: doi:10.1073/pnas.2215098120 ]
- Apo-icp1 csy complex (Complex from Vibrio phage ICP1 2011 A)
- Guide-rna (19 kDa, RNA from Vibrio phage ICP1 2011 A)
- Csy4 (21 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy3 (35 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy1 (22 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy2 (29 kDa, Protein from Vibrio phage ICP1 2011 A)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7wwv
Q-score: 0.484
Zhang M, Peng R, Peng Q, Liu S, Li Z, Zhang Y, Song H, Yang J, Xing X, Wang P, Qi J, Gao GF
PNAS (2023) 120 pp. e2215098120-e2215098120 [ Pubmed: 37094126 DOI: doi:10.1073/pnas.2215098120 ]
- Target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
- Non-target strand dna (18 kDa, DNA from Vibrio phage ICP1 2011 A)
- Guide-rna (19 kDa, RNA from Vibrio phage ICP1 2011 A)
- Target dna bound icp1 csy complex (Complex from Vibrio phage ICP1 2011 A)
- Csy3 (35 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy1 (22 kDa, Protein from Vibrio phage ICP1 2011 A)
- Csy2 (29 kDa, Protein from Vibrio phage ICP1 2011 A)
Structure of Lassa virus polymerase bound to Z matrix protein
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ckl
Q-score: 0.343
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w ]
- Lassa virus polymerase in complex with z matrix protein (260 kDa, Complex from Lassa mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Lassa mammarenavirus)
Structure of Machupo virus polymerase bound to Z matrix protein (monomeric complex)
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7ckm
Q-score: 0.491
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w ]
- Machupo virus polymerase in complex with z matrix protein (260 kDa, Complex from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Ring finger protein z (10 kDa, Protein from Machupo virus)
- Zinc ion (65 Da, Ligand)
Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7el9
Q-score: 0.415
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Machupo virus 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z martix protein and 3'-vrna in dimeric form. (580 kDa, Complex from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
- Zinc ion (65 Da, Ligand)
- Machupo virus 3'-vrna promoter (Complex from Machupo mammarenavirus)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase (Complex)
Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ela
Q-score: 0.447
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Lassa virus polymerase (Complex)
- Lassa virus polymerase in complex with 3'-vrna and z mutant (f36a). (270 kDa, Complex from Lassa mammarenavirus)
- 3-'vrna promoter (Complex from Lassa mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Lassa virus z protein (Complex)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- 3-'vrna promoter (6 kDa, RNA from Lassa mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Lassa mammarenavirus)
Structure of Machupo virus L polymerase in complex with Z protein (dimeric form)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7elb
Q-score: 0.229
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Manganese (ii) ion (54 Da, Ligand)
- Machupo virus polymerase (Complex from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z protein (dimeric form). (580 kDa, Complex from Machupo mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Zinc ion (65 Da, Ligand)
- Machupo virus z matrix protein (Complex)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
Monomeric complex of MACV L bound to Z and 3'-vRNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7elc
Q-score: 0.501
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w Pubmed: 34127846 ]
- Manganese (ii) ion (54 Da, Ligand)
- 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- 3'-vrna promoter (Complex)
- Zinc ion (65 Da, Ligand)
- Machupo virus polymerse (Complex from Machupo mammarenavirus)
- Machupo virus z martix protein (Complex)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z matrix protein and 3'-vrna in monomeric form (270 kDa, Complex from Machupo mammarenavirus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7ctt
Q-score: 0.478
Peng Q, Peng R, Yuan B, Wang M, Zhao J, Fu L, Qi J, Shi Y
Innovation (NY) (2021) 2 pp. 100080-100080 [ Pubmed: 33521757 DOI: doi:10.1016/j.xinn.2021.100080 ]
- Template-rna (5'-r(p*ap*cp*up*ap*gp*cp*up*up*cp*up*up*ap*gp*gp*ap*gp*ap*a)-3') (12 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- The complex of favipiravir bound to core polymerase from sars-cov-2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Rna-directed rna polymerase (106 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- [[(2~{r},3~{s},4~{r},5~{r})-5-(3-aminocarbonyl-5-fluoranyl-2-oxidanylidene-pyrazin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate (529 Da, Ligand)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Primer-rna (5'-r(p*up*up*cp*up*cp*cp*up*ap*ap*gp*ap*ap*gp*cp*up*a)-3') (6 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)