Local refined cryo-EM reconstruction of Omicron BA.5 RBD in complex with 8-9D Fab
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8j1t
Q-score: 0.455
Tai W, Yang K, Liu Y, Li R, Feng S, Chai B, Zhuang X, Qi S, Shi H, Liu Z, Lei J, Ma E, Wang W, Tian C, Le T, Wang J, Chen Y, Tian M, Xiang Y, Yu G, Cheng G
Nat Commun (2023) 14 pp. 8042-8042 [ DOI: doi:10.1038/s41467-023-43798-8 Pubmed: 38052844 ]
- Severe acute respiratory syndrome coronavirus 2 omicron ba.5 rbd bound 8-9d fab (22 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov2 omicron ba.5 rbd (Complex)
- 8-9d heavy chain (12 kDa, Protein from Homo sapiens)
- 8-9d light chain (11 kDa, Protein from Homo sapiens)
- 8-9d fab (Complex from Homo sapiens)
- Spike protein (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM reconstruction of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 8j1v
Q-score: 0.374
Tai W, Yang K, Liu Y, Li R, Feng S, Chai B, Zhuang X, Qi S, Shi H, Liu Z, Lei J, Ma E, Wang W, Tian C, Le T, Wang J, Chen Y, Tian M, Xiang Y, Yu G, Cheng G
Nat Commun (2023) 14 pp. 8042-8042 [ DOI: doi:10.1038/s41467-023-43798-8 Pubmed: 38052844 ]
- Sars-cov2 omicron ba.5 spike ectodomain (Complex)
- 8-9d heavy chain (12 kDa, Protein from Homo sapiens)
- Severe acute respiratory syndrome coronavirus 2 omicron ba.5 spike bound 8-9d fab (369 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- 8-9d light chain (11 kDa, Protein from Homo sapiens)
- Spike protein s2' (123 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 8-9d fab variable region (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Streptococcus thermophilus Cas1-Cas2- prespacer ternary complex
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 8hi1
Q-score: 0.473
Tang D, Jia T, Luo Y, Mou B, Cheng J, Qi S, Yao S, Su Z, Yu Y, Chen Q
Innovation (NY) (2023) 4 pp. 100495-100495 [ Pubmed: 37663930 DOI: doi:10.1016/j.xinn.2023.100495 ]
- Crispr-associated endonuclease cas1 (35 kDa, Protein from Streptococcus thermophilus DGCC 7710)
- Dna (26-mer) (11 kDa, DNA from Phage #D)
- Type i-e crispr-associated endoribonuclease cas2 (13 kDa, Protein from Streptococcus thermophilus DGCC 7710)
- Streptococcus thermophilus cas1-cas2- prespacer ternary complex (Complex from Streptococcus thermophilus DGCC 7710)
- Dna (31-mer) (11 kDa, DNA from Phage #D)
Cryo-EM structure of human OGT-OGA complex
Resolution: 3.92 Å
EM Method: Single-particle
Fitted PDBs: 7yeh
Q-score: 0.269
Lu P, Liu Y, He M, Cao T, Yang M, Qi S, Yu H, Gao H
Nat Commun (2023) 14 pp. 6952-6952 [ DOI: doi:10.1038/s41467-023-42427-8 Pubmed: 37907462 ]
- Uridine-5'-diphosphate (404 Da, Ligand)
- Protein o-glcnacase (103 kDa, Protein from Homo sapiens)
- Udp-n-acetylglucosamine--peptide n-acetylglucosaminyltransferase 110 kda subunit (117 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Cryo-em structure of human ogt-oga complex (400 kDa, Complex from Homo sapiens)
Echovirus3 A-particle in complex with 6D10 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8gsc
Q-score: 0.47
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp2 (27 kDa, Protein from Echovirus E3)
- Echovirus3 a-particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 full particle in complex with 6D10 Fab
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gsd
Q-score: 0.556
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (7 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Echovirus3 full particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (26 kDa, Protein from Echovirus E3)
- Genome polyprotein (29 kDa, Protein from Echovirus E3)
- Genome polyprotein (fragment) (32 kDa, Protein from Echovirus E3)
- Sphingosine (299 Da, Ligand)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 empty particle in complex with 6D10 Fab (upright)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8gse
Q-score: 0.448
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
- Echovirus3 empty particle in complex with 6d10 fab (upright) (Complex)
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gsf
Q-score: 0.445
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Echovirus3 empty particle in complex with 6d10 fab (sideling) (Complex)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)