Echovirus3 A-particle in complex with 6D10 Fab
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8gsc
Q-score: 0.47
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp2 (27 kDa, Protein from Echovirus E3)
- Echovirus3 a-particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 full particle in complex with 6D10 Fab
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8gsd
Q-score: 0.556
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (fragment) (7 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Echovirus3 full particle in complex with 6d10 fab (Complex)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Genome polyprotein (26 kDa, Protein from Echovirus E3)
- Genome polyprotein (29 kDa, Protein from Echovirus E3)
- Genome polyprotein (fragment) (32 kDa, Protein from Echovirus E3)
- Sphingosine (299 Da, Ligand)
- Echovirus e3 (Virus from Echovirus E3)
Echovirus3 empty particle in complex with 6D10 Fab (upright)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8gse
Q-score: 0.448
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
- Echovirus3 empty particle in complex with 6d10 fab (upright) (Complex)
Echovirus3 empty particle in complex with 6D10 Fab (sideling)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8gsf
Q-score: 0.445
Qi S, Fu W, Fan J, Zhang L, Zheng B, Wang K, Wang X, Zhu L, Li X, Zhang Y
Viruses (2022) 14 [ DOI: doi:10.3390/v14112322 Pubmed: 36366420 ]
- Light chain of 6d10 (12 kDa, Protein from Mus musculus)
- Vp1 (26 kDa, Protein from Echovirus E3)
- 6d10 fab (Complex from Mus musculus)
- Vp0 (28 kDa, Protein from Echovirus E3)
- Heavy chain of 6d10 (12 kDa, Protein from Mus musculus)
- Echovirus3 empty particle in complex with 6d10 fab (sideling) (Complex)
- Vp3 (25 kDa, Protein from Echovirus E3)
- Echovirus e3 (Virus from Echovirus E3)
3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ke6
Q-score: 0.427
To Be Published
- 40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar protein 58 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 18s rrna (582 kDa, RNA from Saccharomyces cerevisiae S288C)
- U3 small nucleolar rna-associated protein 5 (72 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein bms1 (135 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 7 (62 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Net1-associated nuclear protein 1 (101 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Pre-rrna-processing protein pno1 (36 kDa, Protein from Saccharomyces cerevisiae S288C)
- Unassigned helices (29 kDa, Protein from Saccharomyces cerevisiae S288C)
- Krr1 small subunit processome component (37 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna 3'-terminal phosphate cyclase-like protein (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 21 (104 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna 2'-o-methyltransferase fibrillarin (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 15 (57 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein fcf2 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar complex protein 4 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 14 (103 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Protein sof1 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Essential nuclear protein 1 (55 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 6 (52 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 5' ets (225 kDa, RNA from Saccharomyces cerevisiae S288C)
- 90s pre-ribosome (mtr4-depleted, enp1-tap) (5 MDa, Complex from Saccharomyces cerevisiae S288c)
- Periodic tryptophan protein 2 (104 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Bud site selection protein 21 (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar ribonucleoprotein protein imp3 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal rna-processing protein 9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 snorna (106 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosomal rna small subunit methyltransferase nep1 (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Something about silencing protein 10 (70 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar complex protein 14 (94 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s22-b (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein enp2 (81 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Zinc ion (65 Da, Ligand)
- U3 small nucleolar rna-associated protein 22 (140 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 20 (287 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 13 (91 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar ribonucleoprotein protein lcp5 (40 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 9 (65 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosome biogenesis protein utp30 (31 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Nucleolar protein 56 (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s5 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 4 (87 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 18 (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 11 (29 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar ribonucleoprotein protein imp4 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Protein faf1 (38 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 13 kda ribonucleoprotein-associated protein (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein mpp10 (67 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ribosomal rna-processing protein 7 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 8 (80 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rrna-processing protein fcf1 (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Rna cytidine acetyltransferase (119 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 12 (106 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- U3 small nucleolar rna-associated protein 10 (200 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
cryo-EM structure of C9ORF72-SMCR8-WDR41
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6lt0
Q-score: 0.26
Tang D, Sheng J, Xu L, Zhan X, Liu J, Jiang H, Shu X, Liu X, Zhang T, Jiang L, Zhou C, Li W, Cheng W, Li Z, Wang K, Lu K, Yan C, Qi S
PNAS (2020) 117 pp. 9876-9883 [ Pubmed: 32303654 DOI: doi:10.1073/pnas.2002110117 ]
- Guanine nucleotide exchange protein smcr8 (105 kDa, Protein from Homo sapiens)
- Dimer of c9-orf72-smcr8-wdr41 (400 kDa, Complex from Homo sapiens)
- Wd repeat-containing protein 41 (51 kDa, Protein from Homo sapiens)
- Guanine nucleotide exchange c9orf72 (54 kDa, Protein from Homo sapiens)