Cryo-EM structure of lipoprotein-bound LolCDE in nanodiscs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9grc
Q-score: 0.005
Qiao W, Shen C, Chen Y, Chang S, Wang X, Yang L, Pang J, Luo Q, Zhang Z, Xiang Y, Zhao C, Lu G, Ding BS, Ying B, Tang X, Dong H
Signal Transduct Target Ther (2024) 9 pp. 354-354 [ Pubmed: 39725716 DOI: doi:10.1038/s41392-024-02067-w ]
- Complex of endogenous atp-bound lolcde in nanodiscs (Complex from Escherichia coli K-12)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lolc (43 kDa, Protein from Escherichia coli K-12)
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Lipoprotein(lpp) (1 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli K-12)
- Palmitic acid (256 Da, Ligand)
Cryo-EM structure of endogenous ATP-bound LolCDE with LolD-E171Q mutations in nanodiscs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9gvk
Q-score: 0.472
Qiao W, Shen C, Chen Y, Chang S, Wang X, Yang L, Pang J, Luo Q, Zhang Z, Xiang Y, Zhao C, Lu G, Ding BS, Ying B, Tang X, Dong H
Signal Transduct Target Ther (2024) 9 pp. 354-354 [ Pubmed: 39725716 DOI: doi:10.1038/s41392-024-02067-w ]
- Lipoprotein-releasing system transmembrane protein lolc (43 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli K-12)
- Complex of endogenous atp-bound lolcde with lold-e171q mutations in nanodiscs (Complex from Escherichia coli K-12)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Hexameric state of the NRC4 resistosome
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 9cc8
Q-score: 0.573
Liu F, Yang Z, Wang C, You Z, Martin R, Qiao W, Huang J, Jacob P, Dangl JL, Carette JE, Luan S, Nogales E, Staskawicz BJ
Cell (2024) 187 pp. 4877-4889.e15 [ DOI: doi:10.1016/j.cell.2024.07.013 Pubmed: 39094568 ]
- Hexameric state of the nrc4 resistosome (Complex from Nicotiana benthamiana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nlr-required for cell death 4 (100 kDa, Protein from Nicotiana benthamiana)
Dodecameric state of the NRC4 resistosome
Resolution: 3.54 Å
EM Method: Single-particle
Fitted PDBs: 9cc9
Q-score: 0.302
Liu F, Yang Z, Wang C, You Z, Martin R, Qiao W, Huang J, Jacob P, Dangl JL, Carette JE, Luan S, Nogales E, Staskawicz BJ
Cell (2024) 187 pp. 4877-4889.e15 [ DOI: doi:10.1016/j.cell.2024.07.013 Pubmed: 39094568 ]
- Dodecameric state of the nrc4 resistosome (Complex from Nicotiana benthamiana)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Nlr-required for cell death 4 (100 kDa, Protein from Nicotiana benthamiana)
Cryo-EM structure of expanded coxsackievirus A16 empty particle after incubation with 8C4 antibody
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 7yv2
Q-score: 0.464
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus A16)
- Cryo-em structure of expanded coxsackievirus a16 empty particle after incubation with 8c4 antibody (Complex from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
Cryo-EM structure of expanded coxsackievirus A16 empty particle in complex with antibody 9B5
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7yv7
Q-score: 0.274
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Cryo-em structure of expanded coxsackievirus a16 empty particle in complex with antibody 9b5 (Complex from Coxsackievirus A16)
- The light chain of antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
- The heavy chain of antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
Cryo-EM structure of compact CA16 empty particle in complex with a neutralizing antibody 8C4
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7yrf
Q-score: 0.433
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Genome polyprotein (25 kDa, Protein from Coxsackievirus A16)
- Cryo-em structure of compact ca16 empty particle in complex with a neutralizing antibody 8c4 (Complex from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- The heavy chain of the antibody 8c4 (22 kDa, Protein from Coxsackievirus A16)
- Light chain of chain (23 kDa, Protein from Coxsackievirus A16)
- Sphingosine (299 Da, Ligand)
- Genome polyprotein (33 kDa, Protein from Coxsackievirus A16)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 7yrh
Q-score: 0.405
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
- Cryo-em structure of compact coxsackievirus a16 empty particle in complex with a neutralizing antibody 9b5 (Complex from Coxsackievirus A16)
- The heavy chain of the antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- The light chain of the antibody 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Sphingosine (299 Da, Ligand)
- Genome polyprotein (33 kDa, Protein from Coxsackievirus A16)
The structure of coxsackievirus A16 mature virion in complex with Fab 8C4
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 7y7m
Q-score: 0.513
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus A16)
- The heavy chain of fab 8c4 (22 kDa, Protein from Coxsackievirus A16)
- Cryo-em structure of coxsackievirus a16 mature virus in complex with a neutralizing antibody 8c4 (Complex from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A16)
- The light chain of fab 8c4 (23 kDa, Protein from Coxsackievirus A16)
Cryo-EM structure of Coxsackievirus A16 in complex with a neutralizing antibody 9B5
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7yms
Q-score: 0.424
Zhang C, Liu C, Shi J, Wang Y, Xu C, Ye X, Liu Q, Li X, Qiao W, Yin Y, Cong Y, Huang Z
Nat Commun (2022) 13 pp. 7854-7854 [ DOI: doi:10.1038/s41467-022-35575-w Pubmed: 36543790 ]
- Capsid protein vp1 (33 kDa, Protein from Coxsackievirus A16)
- The light chain of fab 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp2 (27 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp3 (26 kDa, Protein from Coxsackievirus A16)
- Cryo-em structure of coxsackievirus a16 in complex with a neutralizing antibody 9b5 (Complex from Coxsackievirus A16)
- The heavy chain of fab 9b5 (23 kDa, Protein from Coxsackievirus A16)
- Capsid protein vp4 (7 kDa, Protein from Coxsackievirus A16)