Cryo-EM structure of lipoprotein-bound LolCDE in nanodiscs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9grc
Q-score: 0.005
Qiao W, Shen C, Chen Y, Chang S, Wang X, Yang L, Pang J, Luo Q, Zhang Z, Xiang Y, Zhao C, Lu G, Ding BS, Ying B, Tang X, Dong H
Signal Transduct Target Ther (2024) 9 pp. 354-354 [ Pubmed: 39725716 DOI: doi:10.1038/s41392-024-02067-w ]
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli K-12)
- Complex of endogenous atp-bound lolcde in nanodiscs (Complex from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lolc (43 kDa, Protein from Escherichia coli K-12)
- Lipoprotein(lpp) (1 kDa, Protein from Escherichia coli K-12)
Cryo-EM structure of endogenous ATP-bound LolCDE with LolD-E171Q mutations in nanodiscs
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 9gvk
Q-score: 0.472
Qiao W, Shen C, Chen Y, Chang S, Wang X, Yang L, Pang J, Luo Q, Zhang Z, Xiang Y, Zhao C, Lu G, Ding BS, Ying B, Tang X, Dong H
Signal Transduct Target Ther (2024) 9 pp. 354-354 [ Pubmed: 39725716 DOI: doi:10.1038/s41392-024-02067-w ]
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli K-12)
- Complex of endogenous atp-bound lolcde with lold-e171q mutations in nanodiscs (Complex from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system transmembrane protein lolc (43 kDa, Protein from Escherichia coli K-12)
LolCDE in complex with lipoprotein
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7arh
Q-score: 0.379
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
- Lolcde in complex with a lipoprotein (Complex from Escherichia coli)
- Lpp (1 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ari
Q-score: 0.294
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
- Lolcde apo structure (Complex from Escherichia coli)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
LolCDE in complex with lipoprotein and AMPPNP complex undimerized form
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7arj
Q-score: 0.394
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Lolcde in complex with lipoprotein and amppnp complex undimerized form (Complex from Escherichia coli)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
- Lpp (1 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
LolCDE in complex with AMP-PNP in the closed NBD state
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7ark
Q-score: 0.199
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
- Lolcde in complex with amppnp dimerized form (Complex from Escherichia coli)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
LolCDE in complex with lipoprotein and ADP
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7arl
Q-score: 0.408
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Lpp (Complex from Escherichia coli K-12)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
- Lolcde in complex with lipoprotein and adp (Complex)
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
- Lpp (1 kDa, Protein from Escherichia coli K-12)
- Lipoprotein-releasing complex (Complex from Escherichia coli K-12)
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
LolCDE in complex with lipoprotein and LolA
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7arm
Q-score: 0.339
Tang X, Chang S, Zhang K, Luo Q, Zhang Z, Wang T, Qiao W, Wang C, Shen C, Zhang Z, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 347-355 [ DOI: doi:10.1038/s41594-021-00573-x Pubmed: 33782615 ]
- (2s)-3-hydroxypropane-1,2-diyl dihexadecanoate (568 Da, Ligand)
- Lpp (Complex from Escherichia coli BL21(DE3))
- Palmitic acid (256 Da, Ligand)
- Lipoprotein-releasing system (Complex from Escherichia coli (strain K12))
- Outer-membrane lipoprotein carrier protein (20 kDa, Protein from Escherichia coli (strain K12))
- Lipoprotein-releasing system transmembrane protein lole (45 kDa, Protein from Escherichia coli (strain K12))
- Lpp (1 kDa, Protein from Escherichia coli BL21(DE3))
- Lipoprotein-releasing system atp-binding protein lold (26 kDa, Protein from Escherichia coli (strain K12))
- Lolcde in complex with lipoprotein and lola (Complex)
- Lipoprotein-releasing abc transporter permease subunit lolc (43 kDa, Protein from Escherichia coli (strain K12))
Cryo-EM structure of apo MlaFEDB
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6zy2
Q-score: 0.379
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ DOI: doi:10.1038/s41594-020-00532-y Pubmed: 33199922 ]
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with phospholipid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy3
Q-score: 0.431
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ DOI: doi:10.1038/s41594-020-00532-y Pubmed: 33199922 ]
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Mlafedb (Complex)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)