Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8gat
Q-score: 0.562
Lederhofer J, Tsybovsky Y, Nguyen L, Raab JE, Creanga A, Stephens T, Gillespie RA, Syeda HZ, Fisher BE, Skertic M, Yap C, Schaub AJ, Rawi R, Kwong PD, Graham BS, McDermott AB, Andrews SF, King NP, Kanekiyo M
Immunity (2024) 57 pp. 574-586.e7 [ Pubmed: 38430907 DOI: doi:10.1016/j.immuni.2024.02.003 ]
- Vasodilator-stimulated phosphoprotein, neuraminidase chimera (51 kDa, Protein from Influenza A virus (A/Indiana/10/2011(H3N2)))
- Fab 1g01, heavy chain (25 kDa, Protein from Homo sapiens)
- Influenza virus neuraminidase from a/indiana/10/2011 (h3n2v) in complex with fabs nds.1 and 1g01 (580 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 1g01, light chain (23 kDa, Protein from Homo sapiens)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8gav
Q-score: 0.605
Lederhofer J, Tsybovsky Y, Nguyen L, Raab JE, Creanga A, Stephens T, Gillespie RA, Syeda HZ, Fisher BE, Skertic M, Yap C, Schaub AJ, Rawi R, Kwong PD, Graham BS, McDermott AB, Andrews SF, King NP, Kanekiyo M
Immunity (2024) 57 pp. 574-586.e7 [ Pubmed: 38430907 DOI: doi:10.1016/j.immuni.2024.02.003 ]
- Fab nds.3, heavy chain (24 kDa, Protein from Homo sapiens)
- Fab nds.3, light chain (22 kDa, Protein from Homo sapiens)
- Neuraminidase (51 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Influenza virus neuraminidase from a/darwin/09/2021 (h3n2) in complex with fab nds.3 (380 kDa, Complex from Homo sapiens)
H2 hemagglutinin (A/Singapore/1/1957) in complex with RBS-targeting Fab 4-1-1E02
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tp6
Q-score: 0.475
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with rbs-targeting fab 4-1-1e02 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (56 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Light chain of 4-1-1e02 fab (11 kDa, Protein from Homo sapiens)
- Heavy chain of 4-1-1e02 fab (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
H2 hemagglutinin (A/Singapore/1/1957) in complex with Sa-targeting Fab 4-1-1G03
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8tp7
Q-score: 0.573
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with sa-targeting fab 4-1-1g03 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (63 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Heavy chain of monoclonal antibody 4-1-1g03 (13 kDa, Protein from Homo sapiens)
- Light chain of monoclonal antibody 4-1-1g03 (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
H2 hemagglutinin (A/Singapore/1/1957) in complex with medial-junction-targeting Fab 2-2-1G06
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8tp9
Q-score: 0.476
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- H2 hemagglutinin (a/singapore/1/1957) in complex with medial-junction-targeting fab 2-2-1g06 (Complex from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Hemagglutinin (57 kDa, Protein from Influenza A virus (A/Singapore/1/1957(H2N2)))
- Heavy chain of fab 2-2-1g06 (14 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 2-2-1g06 (11 kDa, Protein from Homo sapiens)
H1 hemagglutinin (NC99) in complex with medial-junction-targeting Fab 2-2-1G06
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8tpa
Q-score: 0.524
Yang YR, Han J, Perrett HR, Richey ST, Rodriguez AJ, Jackson AM, Gillespie RA, O'Connell S, Raab JE, Cominsky LY, Chopde A, Kanekiyo M, Houser KV, Chen GL, McDermott AB, Andrews SF, Ward AB
Cell Rep (2024) 43 pp. 114171-114171 [ DOI: doi:10.1016/j.celrep.2024.114171 Pubmed: 38717904 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Heavy chain of fab 2-2-1g06 (14 kDa, Protein from Homo sapiens)
- H1 hemagglutinin (nc99) in complex with medial-junction-targeting fab 2-2-1g06 (Complex from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza A virus (A/New Caledonia/20/1999(H1N1)))
- Light chain of fab 2-2-1g06 (11 kDa, Protein from Homo sapiens)
Resolution: 3.96 Å
EM Method: Single-particle
Fitted PDBs: 8d21
Q-score: 0.395
Andrews SF, Cominsky LY, Shimberg GD, Gillespie RA, Gorman J, Raab JE, Brand J, Creanga A, Gajjala SR, Narpala S, Cheung CSF, Harris DR, Zhou T, Gordon I, Holman L, Mendoza F, Houser KV, Chen GL, Mascola JR, Graham BS, Kwong PD, Widge A, Dropulic LK, Ledgerwood JE, Kanekiyo M, McDermott AB
Sci Transl Med (2023) 15 pp. eade4976-eade4976 [ DOI: doi:10.1126/scitranslmed.ade4976 Pubmed: 37075126 ]
- 1b06 light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus)
- 1b06 heavy chain (13 kDa, Protein from Homo sapiens)
- Cryo-em structure of the vrc321 clinical trial, vaccine-elicited, human antibody 1b06 in complex with a stabilized nc99 ha trimer (Complex)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 1b06 fab with nc99 ha trimer (Complex from Influenza A virus)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 7l0l
Q-score: 0.555
Andrews SF, Raab JE, Gorman J, Gillespie RA, Cheung CSF, Rawi R, Cominsky LY, Boyington JC, Creanga A, Shen CH, Harris DR, Olia AS, Nazzari AF, Zhou T, Houser KV, Chen GL, Mascola JR, Graham BS, Kanekiyo M, Ledgerwood JE, Kwong PD, McDermott AB
Nat Med (2022) 28 pp. 373-382 [ Pubmed: 35115707 DOI: doi:10.1038/s41591-021-01636-8 ]
- Hemagglutinin ha1 chain (38 kDa, Protein from Influenza A virus (A/Canada/720/2005(H2N2)))
- 316-310-1b11 heavy chain (25 kDa, Protein from Homo sapiens)
- 316-310-1b11 fab in complex with an h2 can05 ha trimer (Complex from Influenza A virus)
- 316-310-1b11 light chain (23 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus (A/Canada/720/2005(H2N2)))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7mfg
Q-score: 0.411
Andrews SF, Raab JE, Gorman J, Gillespie RA, Cheung CSF, Rawi R, Cominsky LY, Boyington JC, Creanga A, Shen CH, Harris DR, Olia AS, Nazzari AF, Zhou T, Houser KV, Chen GL, Mascola JR, Graham BS, Kanekiyo M, Ledgerwood JE, Kwong PD, McDermott AB
Nat Med (2022) 28 pp. 373-382 [ Pubmed: 35115707 DOI: doi:10.1038/s41591-021-01636-8 ]
- 310-030-1d06 light (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus)
- 310-030-1d06 heavy (13 kDa, Protein from Homo sapiens)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 310-030-1d06 fab in complex with an h1 nc99 ha trimer (Complex from Influenza A virus)