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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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author:"Remis J" AND xref_links:"interpro"

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EMD-23827

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Structure of C9orf72:SMCR8:WDR41 in complex with ARF1

Release date: June 23, 2021
Resolution: 3.94 Å
EM Method: Single-particle
Fitted PDBs: 7mge
Q-score: 0.345

Su MY, Fromm SA, Remis J, Toso DB, Hurley JH

Nat Commun (2021) 12 pp. 3786-3786 [ Pubmed: 34145292 DOI: doi:10.1038/s41467-021-24081-0 ]

Sample:

Wd repeat-containing protein 41 (51 kDa, Protein from Homo sapiens)
Complex of c9orf72:smcr8:wdr41 with arf1 (Complex from Homo sapiens)
Guanosine-5'-diphosphate (443 Da, Ligand)
Guanine nucleotide exchange c9orf72 (54 kDa, Protein from Homo sapiens)
Adp-ribosylation factor 1 (18 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
Guanine nucleotide exchange protein smcr8 (105 kDa, Protein from Homo sapiens)
Beryllium trifluoride ion (66 Da, Ligand)

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EMD-12042

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Cryo-EM structure of the human CAK bound to ICEC0942 at 2.5 Angstroms resolution

Release date: Feb. 10, 2021
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7b5o
Q-score: 0.634

Greber BJ, Remis J, Ali S, Nogales E

Biophys J (2021) 120 pp. 677-686 [ Pubmed: 33476598 DOI: doi:10.1016/j.bpj.2020.12.030 ]

Sample:

Cyclin-dependent kinase 7 (43 kDa, Protein from Homo sapiens)
Cdk-activating kinase assembly factor mat1 (38 kDa, Protein from Homo sapiens)
(3r,4r)-4-[[[7-[(phenylmethyl)amino]-3-propan-2-yl-pyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol (394 Da, Ligand)
Cyclin-h (37 kDa, Protein from Homo sapiens)
Cdk-activating kinase (cak) in complex with icec0942 (120 kDa, Complex from Homo sapiens)
Water (18 Da, Ligand)

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EMD-8505

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Structural Basis of Co-translational Quality Control by ArfA and RF2 Binding to Ribosome

Release date: Jan. 11, 2017
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5u4i
Q-score: 0.226

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H

Nature (2017) 541 pp. 554-557 [ Pubmed: 28077875 DOI: doi:10.1038/nature21053 ]

Sample:

P-site or e-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l17 (Cellular component from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l9 (Cellular component from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (40 MDa, Cellular component from Escherichia coli)
30s ribosomal protein s18 (Cellular component from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (Cellular component from Escherichia coli)
50s ribosomal protein l6 (Cellular component from Escherichia coli)
50s ribosomal protein l15 (Cellular component from Escherichia coli)
50s ribosomal protein l18 (Cellular component from Escherichia coli)
50s ribosomal protein l34 (Cellular component from Escherichia coli)
30s ribosomal protein s9 (Cellular component from Escherichia coli)
30s ribosomal protein s2 (Complex from Escherichia coli)
50s ribosomal protein l2 (Cellular component from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
16s rrna (497 kDa, RNA from Escherichia coli)
50s ribosomal protein l14 (Cellular component from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
Zinc ion (65 Da, Ligand)
30s ribosomal protein s7 (Cellular component from Escherichia coli)
30s ribosomal protein s3 (Cellular component from Escherichia coli)
30s ribosomal protein s10 (Cellular component from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
5s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l4 (Cellular component from Escherichia coli)
50s subunit (Complex)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s11 (Cellular component from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l16 (Cellular component from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (Cellular component from Escherichia coli)
50s ribosomal protein l25 (Complex from Escherichia coli)
P-site or e-site fmet-trna(fmet) (Cellular component)
50s ribosomal protein l23 (Cellular component from Escherichia coli)
50s ribosomal protein l32 (Cellular component from Escherichia coli)
50s ribosomal protein l21 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (6 MDa, Cellular component from Escherichia coli)
30s ribosomal protein s21 (Cellular component from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l24 (Cellular component from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
5s rrna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s subunit (Complex)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (Cellular component from Escherichia coli)
30s ribosomal protein s15 (Cellular component from Escherichia coli)
16s rrna (Cellular component from Escherichia coli)
50s ribosomal protein l13 (Cellular component from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s20 (Cellular component from Escherichia coli)
Mrna (5 kDa, RNA from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l28 (Cellular component from Escherichia coli)
50s ribosomal protein l27 (Cellular component from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l29 (Cellular component from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (Cellular component from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s5 (Cellular component from Escherichia coli)
30s ribosomal protein s19 (Cellular component from Escherichia coli)
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s12 (Cellular component from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (Cellular component from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l11 (Cellular component from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l22 (Cellular component from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (Cellular component from Escherichia coli)
50s ribosomal protein l19 (Cellular component from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l20 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (Cellular component from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s16 (Cellular component from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (Cellular component from Escherichia coli)
Mrna (Cellular component)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s13 (Cellular component from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (Cellular component from Escherichia coli)
50s ribosomal protein l35 (Cellular component from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
30s ribosomal protein s4 (Cellular component from Escherichia coli)

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EMD-8506

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Structural Basis of Co-translational Quality Control by ArfA and RF2 Binding to Ribosome

Release date: Jan. 11, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5u4j
Q-score: 0.402

Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H

Nature (2017) 541 pp. 554-557 [ Pubmed: 28077875 DOI: doi:10.1038/nature21053 ]

Sample:

Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
16s rrna (497 kDa, RNA from Escherichia coli)
50s subunit (Complex from Escherichia coli)
30s subunit (Complex from Escherichia coli)
Peptide chain release factor 2 (40 MDa, Cellular component from Escherichia coli)
16s rrna (Cellular component from Escherichia coli)
P-site trna fmet (Cellular component from Escherichia coli)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
Mrna (5 kDa, RNA from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
Alternative ribosome-rescue factor a (6 MDa, Cellular component from Escherichia coli)
Mrna (Cellular component)
23s rrna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (Cellular component from Escherichia coli)
30s ribosomal protein s12 (Cellular component from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (Cellular component from Escherichia coli)
Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli)
23s rrna (Cellular component from Escherichia coli)
P-site trna fmet (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (Cellular component from Escherichia coli)

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Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

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Select database:

EMDB [4]

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Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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