Structure of E. coli PtuA hexamer
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8sux
Q-score: 0.5
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y
Nat Struct Mol Biol (2024) 31 pp. 413-423 [ DOI: doi:10.1038/s41594-023-01172-8 Pubmed: 38177683 ]
- Ptua (Complex from Escherichia coli)
- Ptua (53 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8ee4
Q-score: 0.576
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y
Nat Struct Mol Biol (2024) 31 pp. 413-423 [ DOI: doi:10.1038/s41594-023-01172-8 Pubmed: 38177683 ]
- Ptua (53 kDa, Protein from Escherichia coli)
- 6 ptua form as a complex (Complex from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Structure of focused PtuA(dimer) and PtuB(monomer) complex
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8ee7
Q-score: 0.609
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y
Nat Struct Mol Biol (2024) 31 pp. 413-423 [ DOI: doi:10.1038/s41594-023-01172-8 Pubmed: 38177683 ]
- Ptub (28 kDa, Protein from Escherichia coli)
- Ptua (53 kDa, Protein from Escherichia coli)
- 6 ptua form as a complex (Complex from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Structure of E.coli Septu (PtuAB) complex
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8eea
Q-score: 0.603
Li Y, Shen Z, Zhang M, Yang XY, Cleary SP, Xie J, Marathe IA, Kostelic M, Greenwald J, Rish AD, Wysocki VH, Chen C, Chen Q, Fu TM, Yu Y
Nat Struct Mol Biol (2024) 31 pp. 413-423 [ DOI: doi:10.1038/s41594-023-01172-8 Pubmed: 38177683 ]
- 6 ptua and 2 ptub form as a complex (Complex from Escherichia coli)
- Ptub (28 kDa, Protein from Escherichia coli)
- Ptua (53 kDa, Protein from Escherichia coli)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Structure of single homo-hexameric Holliday junction ATP-dependent DNA helicase RuvB motor
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 8efv
Q-score: 0.556
Rish AD, Shen Z, Chen Z, Zhang N, Zheng Q, Fu TM
Nat Commun (2023) 14 pp. 3549-3549 [ Pubmed: 37322069 DOI: doi:10.1038/s41467-023-39250-6 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Single homo-hexameric aaa+ atpase ruvb motor (Complex from Thermus thermophilus HB8)
- 49-mer dna (15 kDa, DNA from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Holliday junction atp-dependent dna helicase ruvb (36 kDa, Protein from Thermus thermophilus HB8)
- 51-mer dna (15 kDa, DNA from Thermus thermophilus HB8)
Structure of double homo-hexameric AAA+ ATPase RuvB motors
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8efy
Q-score: 0.531
Rish AD, Shen Z, Chen Z, Zhang N, Zheng Q, Fu TM
Nat Commun (2023) 14 pp. 3549-3549 [ Pubmed: 37322069 DOI: doi:10.1038/s41467-023-39250-6 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Ssdna (15 kDa, DNA from Thermus thermophilus HB8)
- Ssdna (15 kDa, DNA from Thermus thermophilus HB8)
- Magnesium ion (24 Da, Ligand)
- Double homo-hexameric aaa+ atpase ruvb motors (Complex from Thermus thermophilus HB8)
- Holliday junction atp-dependent dna helicase ruvb (36 kDa, Protein from Thermus thermophilus HB8)
RuvA Holliday junction DNA complex
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 8gh8
Q-score: 0.227
Rish AD, Shen Z, Chen Z, Zhang N, Zheng Q, Fu TM
Nat Commun (2023) 14 pp. 3549-3549 [ Pubmed: 37322069 DOI: doi:10.1038/s41467-023-39250-6 ]
- Dna (34-mer) (10 kDa, DNA from synthetic construct)
- Holliday junction dna adapted from pdb 2hoi (Complex from Punavirus P1)
- Dna (34-mer) (10 kDa, DNA from synthetic construct)
- Holliday junction branch migration complex subunit ruva (14 kDa, Protein from Thermus thermophilus HB8)
- Ruva dna binding protein complexed with holliday junction dna (Complex from Thermus thermophilus HB8)
- Tetrameric ruva binding protein (Complex from Thermus thermophilus HB8)