Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9fk0
Q-score: 0.415
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Lgtv with tbev prme (Virus)
- Small envelope protein m (Complex from tick-borne encephalitis virus-European subtype)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Genome polyprotein,envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Genome polyprotein (8 kDa, Protein from tick-borne encephalitis virus-European subtype)
- Envelope protein e (Complex from tick-borne encephalitis virus-European subtype)
LGTV TP21. Langat virus, strain TP21
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 9foj
Q-score: 0.332
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Langat virus (strain tp21) (Virus from Langat virus (strain TP21))
- Small envelope protein m (8 kDa, Protein from Langat virus (strain TP21))
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
Tick-borne encephalitis virus (strain HYPR) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Tick-borne encephalitis virus (strain Neudoerfl) immature particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 immature virus particle
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ DOI: doi:10.1126/sciadv.adl1888 Pubmed: 38959313 ]
sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8d48
Q-score: 0.449
Bianchini F, Crivelli V, Abernathy ME, Guerra C, Palus M, Muri J, Marcotte H, Piralla A, Pedotti M, De Gasparo R, Simonelli L, Matkovic M, Toscano C, Biggiogero M, Calvaruso V, Svoboda P, Cervantes Rincon T, Fava T, Podesvova L, Shanbhag AA, Celoria A, Sgrignani J, Stefanik M, Honig V, Pranclova V, Michalcikova T, Prochazka J, Guerrini G, Mehn D, Ciabattini A, Abolhassani H, Jarrossay D, Uguccioni M, Medaglini D, Pan-Hammarstrom Q, Calzolai L, Fernandez D, Baldanti F, Franzetti-Pellanda A, Garzoni C, Sedlacek R, Ruzek D, Varani L, Cavalli A, Barnes CO, Robbiani DF
Sci Immunol (2023) 8 pp. eade0958-eade0958 [ Pubmed: 36701425 DOI: doi:10.1126/sciimmunol.ade0958 ]
- Sd1.040 fab light chain (24 kDa, Protein from Homo sapiens)
- Sd1.040 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Sd1.040 fab in complex with sars-cov-2 spike 2p (79 kDa, Complex)
- Sd1.040 fab heavy chain, sd1.040 fab light chain (Complex from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
The cryo-EM structure of Tick-borne encephalitis virus mature particle
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5o6a
Q-score: 0.394
Fuzik T, Formanova P, Ruzek D, Yoshii K, Niedrig M, Plevka P
Nat Commun (2018) 9 pp. 436-436 [ Pubmed: 29382836 DOI: doi:10.1038/s41467-018-02882-0 ]
- Envelope protein (53 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
- Tick-borne encephalitis virus (strain hypr) (22 MDa, Virus from Tick-borne encephalitis virus (strain HYPR))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Small envelope protein m (8 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5o6v
Q-score: 0.277
Fuzik T, Formanova P, Ruzek D, Yoshii K, Niedrig M, Plevka P
Nat Commun (2018) 9 pp. 436-436 [ Pubmed: 29382836 DOI: doi:10.1038/s41467-018-02882-0 ]
- Envelope protein (53 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
- Mus musculus fab (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Small envelope protein m (8 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
- Tick-borne encephalitis virus (strain hypr) (Virus from Tick-borne encephalitis virus (strain HYPR))
- Fab 19/1786 - heavy chain (22 kDa, Protein from Mus musculus)
- Fab 19/1786 - light chain (22 kDa, Protein from Mus musculus)
- Tick-borne encephalitis virus (strain hypr) and fab (Complex)