Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 9fk0
Q-score: 0.415
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- Envelope protein e (Complex from tick-borne encephalitis virus-European subtype)
- Lgtv with tbev prme (Virus)
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Genome polyprotein (8 kDa, Protein from tick-borne encephalitis virus-European subtype)
- Small envelope protein m (Complex from tick-borne encephalitis virus-European subtype)
- Genome polyprotein,envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
LGTV TP21. Langat virus, strain TP21
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 9foj
Q-score: 0.332
Rosendal E, Bisikalo K, Willekens SM, Lindgren M, Holoubek J, Svoboda P, Lappalainen A, Konighofer E, Mirgorodskaya E, Norden R, Morini F, Rosenbaum W, Ruzek D, Ahlgren U, Anastasina M, Merits A, Butcher SJ, Nilsson E, Overby AK
bioRxiv (2024) [ DOI: doi:10.1101/2024.10.16.618642 ]
- 1-palmitoyl-2-linoleoyl-sn-glycero-3-phosphocholine (758 Da, Ligand)
- Envelope protein e (53 kDa, Protein from Langat virus (strain TP21))
- Small envelope protein m (8 kDa, Protein from Langat virus (strain TP21))
- Langat virus (strain tp21) (Virus from Langat virus (strain TP21))
Trimeric prM/E spike of Tick-borne encephalitis virus immature particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8puv
Q-score: 0.446
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
Tick-borne encephalitis virus Kuutsalo-14 prM3E3 trimer
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8ppq
Q-score: 0.334
Anastasina M, Fuzik T, Domanska A, Pulkkinen LIA, Smerdova L, Formanova PP, Strakova P, Novacek J, Ruzek D, Plevka P, Butcher SJ
Sci Adv (2024) 10 pp. eadl1888-eadl1888 [ Pubmed: 38959313 DOI: doi:10.1126/sciadv.adl1888 ]
- Envelope protein e (53 kDa, Protein from Tick-borne encephalitis virus)
- Protein prm (18 kDa, Protein from Tick-borne encephalitis virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Tick-borne encephalitis virus (Virus from Tick-borne encephalitis virus)
sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8d48
Q-score: 0.449
Bianchini F, Crivelli V, Abernathy ME, Guerra C, Palus M, Muri J, Marcotte H, Piralla A, Pedotti M, De Gasparo R, Simonelli L, Matkovic M, Toscano C, Biggiogero M, Calvaruso V, Svoboda P, Cervantes Rincon T, Fava T, Podesvova L, Shanbhag AA, Celoria A, Sgrignani J, Stefanik M, Honig V, Pranclova V, Michalcikova T, Prochazka J, Guerrini G, Mehn D, Ciabattini A, Abolhassani H, Jarrossay D, Uguccioni M, Medaglini D, Pan-Hammarstrom Q, Calzolai L, Fernandez D, Baldanti F, Franzetti-Pellanda A, Garzoni C, Sedlacek R, Ruzek D, Varani L, Cavalli A, Barnes CO, Robbiani DF
Sci Immunol (2023) 8 pp. eade0958-eade0958 [ Pubmed: 36701425 DOI: doi:10.1126/sciimmunol.ade0958 ]
- Sd1.040 fab heavy chain (24 kDa, Protein from Homo sapiens)
- Spike glycoprotein (139 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sd1.040 fab heavy chain, sd1.040 fab light chain (Complex from Homo sapiens)
- Spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sd1.040 fab light chain (24 kDa, Protein from Homo sapiens)
- Sd1.040 fab in complex with sars-cov-2 spike 2p (79 kDa, Complex)
The cryo-EM structure of Tick-borne encephalitis virus mature particle
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5o6a
Q-score: 0.394
Fuzik T, Formanova P, Ruzek D, Yoshii K, Niedrig M, Plevka P
Nat Commun (2018) 9 pp. 436-436 [ Pubmed: 29382836 DOI: doi:10.1038/s41467-018-02882-0 ]
- Envelope protein (53 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
- Tick-borne encephalitis virus (strain hypr) (22 MDa, Virus from Tick-borne encephalitis virus (strain HYPR))
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Small envelope protein m (8 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 5o6v
Q-score: 0.277
Fuzik T, Formanova P, Ruzek D, Yoshii K, Niedrig M, Plevka P
Nat Commun (2018) 9 pp. 436-436 [ Pubmed: 29382836 DOI: doi:10.1038/s41467-018-02882-0 ]
- Envelope protein (53 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))
- Tick-borne encephalitis virus (strain hypr) (Virus from Tick-borne encephalitis virus (strain HYPR))
- Fab 19/1786 - light chain (22 kDa, Protein from Mus musculus)
- Tick-borne encephalitis virus (strain hypr) and fab (Complex)
- Mus musculus fab (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 19/1786 - heavy chain (22 kDa, Protein from Mus musculus)
- Small envelope protein m (8 kDa, Protein from Tick-borne encephalitis virus (strain Hypr))