Automethylated PRC2 dimer bound to nucleosome
Sauer PV, Pavlenko E, Cookis T, Zirden LC, Renn J, Singhal A, Hunold P, Hoehne-Wiechmann MN, van Ray O, Kaschani F, Kaiser M, Hänsel-Hertsch R, Sanbonmatsu KY, Nogales E, Poepsel S
Mol Cell (2024) [ DOI: 10.1016/j.molcel.2024.08.025 Pubmed: 39303719 ]
Image sets:
- Dataset3, H1 bound to nucleosome
- Dataset1, automethylated PRC2 dimer bound to nucleosome, motion corrected, dose weighted, streptavidin subtracted
- Dataset4, PRC2_J119-450 bound to H1-nucleosome, motion corrected, dose weighted, streptavidin subtracted
- Dataset2, automethylated PRC2 dimer bound to nucleosome, motion corrected, dose weighted, streptavidin subtracted
Automethylated PRC2 dimer bound to nucleosome
Resolution: 6.2 Å
EM Method: Single-particle
Fitted PDBs: 8t9g
Q-score: 0.163
Sauer PV, Pavlenko E, Cookis T, Zirden LC, Renn J, Singhal A, Hunold P, Hoehne-Wiechmann MN, van Ray O, Kaschani F, Kaiser M, Hansel-Hertsch R, Sanbonmatsu KY, Nogales E, Poepsel S
Mol Cell (2024) 84 pp. 3885-3898.e8 [ Pubmed: 39303719 DOI: doi:10.1016/j.molcel.2024.08.025 ]
- Proximal prc2 (Complex from Homo sapiens)
- Polycomb protein suz12 (72 kDa, Protein from Homo sapiens)
- Distal prc2 (Complex from Homo sapiens)
- Dna (226-mer) (65 kDa, DNA from synthetic construct)
- Histone-lysine n-methyltransferase ezh2 (86 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Zinc finger protein aebp2 (34 kDa, Protein from Homo sapiens)
- Activating methylated peptide (1 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (226-mer) (66 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Automethylated prc2 dimer bound to nucleosome (290 kDa, Complex from Homo sapiens)
- Nucleosome (Complex from Xenopus laevis)
PRC2 monomer bound to nucleosome
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 8tas
Q-score: 0.259
Sauer PV, Pavlenko E, Cookis T, Zirden LC, Renn J, Singhal A, Hunold P, Hoehne-Wiechmann MN, van Ray O, Kaschani F, Kaiser M, Hansel-Hertsch R, Sanbonmatsu KY, Nogales E, Poepsel S
Mol Cell (2024) 84 pp. 3885-3898.e8 [ Pubmed: 39303719 DOI: doi:10.1016/j.molcel.2024.08.025 ]
- Dna (226-mer) (65 kDa, DNA from synthetic construct)
- Polycomb protein suz12 (72 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh2 (86 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Zinc finger protein aebp2 (34 kDa, Protein from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Dna (226-mer) (66 kDa, DNA from synthetic construct)
- Histone h2a (14 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Prc2 monomer bound to nucleosome (290 kDa, Complex from Homo sapiens)
- Prc2 (Complex from Homo sapiens)
PRC2-J119-450 monomer bound to H1-nucleosome
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 8tb9
Q-score: 0.261
Sauer PV, Pavlenko E, Cookis T, Zirden LC, Renn J, Singhal A, Hunold P, Hoehne-Wiechmann MN, van Ray O, Kaschani F, Kaiser M, Hansel-Hertsch R, Sanbonmatsu KY, Nogales E, Poepsel S
Mol Cell (2024) 84 pp. 3885-3898.e8 [ Pubmed: 39303719 DOI: doi:10.1016/j.molcel.2024.08.025 ]
- Protein jumonji (36 kDa, Protein from Homo sapiens)
- Dna (226-mer) (65 kDa, DNA from synthetic construct)
- Polycomb protein suz12 (72 kDa, Protein from Homo sapiens)
- Histone h1.0 (21 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh2 (86 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Zinc finger protein aebp2 (34 kDa, Protein from Homo sapiens)
- Prc2-j119-450 monomer bound to h1-nucleosome (290 kDa, Complex from Homo sapiens)
- Prc2 (Complex from Homo sapiens)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Histone h2a type 1 (14 kDa, Protein from Xenopus laevis)
- Dna (226-mer) (66 kDa, DNA from synthetic construct)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Nucleosome (Complex from Xenopus laevis)
Sauer PV, Pavlenko E, Cookis T, Zirden LC, Renn J, Singhal A, Hunold P, Hoehne-Wiechmann MN, van Ray O, Kaschani F, Kaiser M, Hansel-Hertsch R, Sanbonmatsu KY, Nogales E, Poepsel S
Mol Cell (2024) 84 pp. 3885-3898.e8 [ Pubmed: 39303719 DOI: doi:10.1016/j.molcel.2024.08.025 ]
- H1-nucleosome (chromatosome) (290 kDa, Complex from Xenopus laevis)
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 4d5n, 4d5l, 4d5y
Q-score: 0.10566667
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM
Mol Cell (2015) 57 pp. 422-432 [ Pubmed: 25601755 DOI: doi:10.1016/j.molcel.2014.12.016 ]
- Eukaryoric release factor 1 (50 kDa, Protein from Homo sapiens)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Ribosomal 80s termination complex with crpv ires-rna and erf1 (4 MDa, Sample)
- Cricket paralysis virus ires rna (RNA from Cricket paralysis virus)
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 4d61, 4d67
Q-score: 0.1345
Muhs M, Hilal T, Mielke T, Skabkin MA, Sanbonmatsu KY, Pestova TV, Spahn CM
Mol Cell (2015) 57 pp. 422-432 [ Pubmed: 25601755 DOI: doi:10.1016/j.molcel.2014.12.016 ]
- Ribosomal 80s termination complex with crpv ires-rna, erf1 and erf3 (4 MDa, Sample)
- 80s ribosome (4 MDa, Complex from Oryctolagus cuniculus)
- Eukaryotic release factor 3 (68 kDa, Protein from Homo sapiens)
- Cricket paralysis virus ires rna (RNA from Cricket paralysis virus)
- Eukaryoric release factor 1 (50 kDa, Protein from Homo sapiens)
Resolution: 6.9 Å
EM Method: Single-particle
Fitted PDBs: 4uje
Q-score: 0.171
Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung C-S, Nierhaus KH, Sanbonmatsu KY, Spahn CMT
Cell (2014) 158 pp. 121-131 [ Pubmed: 24995983 DOI: doi:10.1016/j.cell.2014.04.044 ]
- Transfer rna (25 kDa, RNA from Oryctolagus cuniculus)
- Transfer rna (25 kDa, RNA from Bos taurus)
- Re-associated 80s (4 MDa, Complex from Oryctolagus cuniculus)
- Post-translocational rabbit 80s ribosome with two trnas and mrna bound (4 MDa, Sample)
- Messenger rna (14 kDa, RNA from Escherichia coli)
Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung C-S, Nierhaus KH, Sanbonmatsu KY, Spahn CMT
Cell (2014) 158 pp. 121-131 [ Pubmed: 24995983 DOI: doi:10.1016/j.cell.2014.04.044 ]
- Transfer rna (25 kDa, RNA from Oryctolagus cuniculus)
- Re-associated 80s (4 MDa, Complex from Oryctolagus cuniculus)
- Pre-translocational state (classical-1) of mammalian 80s ribosome with three trnas and mrna bound (4 MDa, Sample)
- Transfer rna (25 kDa, RNA from Bos taurus)
- Messenger rna (14 kDa, RNA from Escherichia coli)
Budkevich TV, Giesebrecht J, Behrmann E, Loerke J, Ramrath D, Mielke T, Ismer J, Hildebrand P, Tung C-S, Nierhaus KH, Sanbonmatsu KY, Spahn CMT
Cell (2014) 158 pp. 121-131 [ Pubmed: 24995983 DOI: doi:10.1016/j.cell.2014.04.044 ]
- Transfer rna (25 kDa, RNA from Oryctolagus cuniculus)
- Pre-translocational (classical-2) rabbit 80s ribosome with three trnas and mrna bound (4 MDa, Sample)
- Re-associated 80s (4 MDa, Complex from Oryctolagus cuniculus)
- Transfer rna (25 kDa, RNA from Bos taurus)
- Messenger rna (14 kDa, RNA from Escherichia coli)