Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation
Resolution: 4.57 Å
EM Method: Single-particle
Fitted PDBs: 7vwy
Q-score: 0.359
Shi J, Wang F, Li F, Wang L, Xiong Y, Wen A, Jin Y, Jin S, Gao F, Feng Z, Li J, Zhang Y, Shang Z, Wang S, Feng Y, Lin W
Nucleic Acids Res (2022) 50 pp. 5974-5987 [ Pubmed: 35641097 DOI: doi:10.1093/nar/gkac433 ]
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna scaffold forward strand (21 kDa, DNA from Escherichia coli)
- Right origin-binding protein (33 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Rob-dependent transcription activation complex (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna scaffold reverse strand (21 kDa, DNA from Escherichia coli)
Cryo-EM structure of Rob-dependent transcription activation complex in a unique conformation
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7vwz
Q-score: 0.345
Shi J, Wang F, Li F, Wang L, Xiong Y, Wen A, Jin Y, Jin S, Gao F, Feng Z, Li J, Zhang Y, Shang Z, Wang S, Feng Y, Lin W
Nucleic Acids Res (2022) 50 pp. 5974-5987 [ Pubmed: 35641097 DOI: doi:10.1093/nar/gkac433 ]
- Rna polymerase subunits (Complex from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Micf promoter dna reverse strand (21 kDa, DNA from Escherichia coli)
- Right origin-binding protein (33 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Micf promoter dna forward strand (21 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Rob-dependent transcription activation complex (Complex from Escherichia coli K-12)
- Dna (Complex)
Resolution: 9.83 Å
EM Method: Subtomogram averaging
Fitted PDBs: 6pwb
Q-score: 0.059
Gibson KH, Trajtenberg F, Wunder EA, Brady MR, San Martin F, Mechaly A, Shang Z, Liu J, Picardeau M, Ko A, Buschiazzo A, Sindelar CV
eLife (2020) 9 [ DOI: doi:10.7554/eLife.53672 Pubmed: 32157997 ]
- Flagellar coiling protein a (fcpa) (28 kDa, Protein from Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
- Flagellar coiling protein b (fcpb) (25 kDa, Protein from Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
- Flagellar filament purified from the periplasm of the spirochete bacterium, leptospira biflexa (Cellular component from Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)')
- Flagellin b1 (flab1) (29 kDa, Protein from Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris))
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 5.5
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6ilj
Q-score: 0.51
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 5.5 (Complex from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ilk
Q-score: 0.586
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 7.4 (Complex from Echovirus E6)
- Complement decay-accelerating factor (21 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (31 kDa, Protein from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)
Cryo-EM structure of Echovirus 6 complexed with its uncoating receptor FcRn at PH 7.4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ilm
Q-score: 0.456
Zhao X, Zhang G, Liu S, Chen X, Peng R, Dai L, Qu X, Li S, Song H, Gao Z, Yuan P, Liu Z, Li C, Shang Z, Li Y, Zhang M, Qi J, Wang H, Du N, Wu Y, Bi Y, Gao S, Shi Y, Yan J, Zhang Y, Xie Z, Wei W, Gao GF
Cell (2019) 177 pp. 1553-1565.e16 [ DOI: doi:10.1016/j.cell.2019.04.035 Pubmed: 31104841 ]
- Igg receptor fcrn large subunit p51 (29 kDa, Protein from Homo sapiens)
- Capsid protein vp3 (26 kDa, Protein from Echovirus E6)
- Capsid protein vp1 (32 kDa, Protein from Echovirus E6)
- Capsid protein vp2 (28 kDa, Protein from Echovirus E6)
- Beta-2-microglobulin (11 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 7.4 (Complex from Echovirus E6)
- Sphingosine (299 Da, Ligand)
- Capsid protein vp4 (7 kDa, Protein from Echovirus E6)