Cryo-EM structure of human respiratory syncytial virus fusion protein variant
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8ye3
Q-score: 0.442
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7un6
Q-score: 0.362
Nat Struct Mol Biol (2022) 29 pp. 774-780 [ DOI: doi:10.1038/s41594-022-00807-6 Pubmed: 35915257 ]
- (e3-independent) e2 ubiquitin-conjugating enzyme (147 kDa, Protein from Homo sapiens)
- Nucleosome assembly protein 1-like 1 (48 kDa, Protein from Homo sapiens)
- Complex of ube2o with nap1l1 (Complex from Homo sapiens)
SfSTING with c-di-GMP single fiber
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7un8
Q-score: 0.487
Morehouse BR, Yip MCJ, Keszei AFA, McNamara-Bordewick NK, Shao S, Kranzusch PJ
Nature (2022) 608 pp. 803-807 [ Pubmed: 35859168 DOI: doi:10.1038/s41586-022-04999-1 ]
- 9,9'-[(2r,3r,3as,5s,7ar,9r,10r,10as,12s,14ar)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2h,7h-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6h-purin-6-one) (690 Da, Ligand)
- Cd-ntase-associated protein 12 (36 kDa, Protein from Sphingobacterium faecium)
- Sfsting with c-di-gmp single fiber (Complex from Sphingobacterium faecium)
Metazoan pre-targeting GET complex (cBUGG-in)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ru9
Q-score: 0.423
Keszei AFA, Yip MCJ, Hsieh TC, Shao S
Nat Struct Mol Biol (2021) 28 pp. 1029-1037 [ Pubmed: 34887561 DOI: doi:10.1038/s41594-021-00690-7 ]
- Zinc ion (65 Da, Ligand)
- Large proline-rich protein bag6 (14 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atpase get3 (38 kDa, Protein from Danio rerio)
- Golgi to er traffic protein 4 homolog (37 kDa, Protein from Homo sapiens)
- Metazoan pre-targeting get complex cbugg-in (Complex from Danio rerio)
- Ubiquitin-like protein 4a (18 kDa, Protein from Homo sapiens)
Metazoan pre-targeting GET complex (cBUGG-out)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7rua
Q-score: 0.409
Keszei AFA, Yip MCJ, Hsieh TC, Shao S
Nat Struct Mol Biol (2021) 28 pp. 1029-1037 [ Pubmed: 34887561 DOI: doi:10.1038/s41594-021-00690-7 ]
- Zinc ion (65 Da, Ligand)
- Metazoan pre-targeting get complex cbugg-out (Complex from Danio rerio)
- Large proline-rich protein bag6 (14 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atpase get3 (38 kDa, Protein from Danio rerio)
- Golgi to er traffic protein 4 homolog (37 kDa, Protein from Homo sapiens)
- Ubiquitin-like protein 4a (18 kDa, Protein from Homo sapiens)
Metazoan pre-targeting GET complex with SGTA (cBUGGS)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ruc
Q-score: 0.424
Keszei AFA, Yip MCJ, Hsieh TC, Shao S
Nat Struct Mol Biol (2021) 28 pp. 1029-1037 [ Pubmed: 34887561 DOI: doi:10.1038/s41594-021-00690-7 ]
- Zinc ion (65 Da, Ligand)
- Large proline-rich protein bag6 (14 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Atpase get3 (38 kDa, Protein from Danio rerio)
- Golgi to er traffic protein 4 homolog (37 kDa, Protein from Homo sapiens)
- Metazoan pre-targeting get complex with sgta (Complex from Danio rerio)
- Ubiquitin-like protein 4a (18 kDa, Protein from Homo sapiens)
Structure of P5A-ATPase Spf1, Apo form
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6xmp
Q-score: 0.475
McKenna MJ, Sim SI, Ordureau A, Wei L, Harper JW, Shao S, Park E
Science (2020) 369 [ Pubmed: 32973005 DOI: doi:10.1126/science.abc5809 ]
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- P5a-type atpase (137 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- P5a-atpase spf1 apo form (Complex from Saccharomyces cerevisiae)
Structure of P5A-ATPase Spf1, AMP-PCP-bound form
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6xmq
Q-score: 0.466
McKenna MJ, Sim SI, Ordureau A, Wei L, Harper JW, Shao S, Park E
Science (2020) 369 [ Pubmed: 32973005 DOI: doi:10.1126/science.abc5809 ]
- P5a-type atpase (137 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- P5a-atpase spf1 amp-pcp-bound form (Complex from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Phosphomethylphosphonic acid adenylate ester (505 Da, Ligand)
Structure of P5A-ATPase Spf1, AlF4-bound form
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6xms
Q-score: 0.506
McKenna MJ, Sim SI, Ordureau A, Wei L, Harper JW, Shao S, Park E
Science (2020) 369 [ Pubmed: 32973005 DOI: doi:10.1126/science.abc5809 ]
- P5a-type atpase (137 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- P5a-atpase spf1, alf4-bound form (Complex from Saccharomyces cerevisiae)
- Tetrafluoroaluminate ion (102 Da, Ligand)
Structure of P5A-ATPase Spf1, BeF3-bound form
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6xmt
Q-score: 0.489
McKenna MJ, Sim SI, Ordureau A, Wei L, Harper JW, Shao S, Park E
Science (2020) 369 [ Pubmed: 32973005 DOI: doi:10.1126/science.abc5809 ]
- P5a-atpase spf1 bef3-bound form (Complex from Saccharomyces cerevisiae)
- P5a-type atpase (137 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- Beryllium trifluoride ion (66 Da, Ligand)