Structure of the plasma coagulation Factor XIII A2B2 heterotetrameric complex.
Singh S, Hagelueken G, Ugurlar D, Ramaraje Urs SU, Sharma A, Mahapatra M, Drepper F, Imhof D, Huesgen PF, Oldenburg J, Geyer M, Biswas A
Blood (2025) 145 pp. 438-449 [ DOI: doi:10.1182/blood.2024025369 Pubmed: 39447073 ]
- Factor xiii a2b2 heterotetramer (Complex from Homo sapiens)
- Coagulation factor xiii a chain (83 kDa, Protein from Homo sapiens)
- Coagulation factor xiii b chain (75 kDa, Protein from Homo sapiens)
High resolution structure of the coagulation Factor XIII A2B2 heterotetramer complex.
Resolution: 2.41 Å
EM Method: Single-particle
Fitted PDBs: 8cmu
Q-score: 0.601
Singh S, Hagelueken G, Ugurlar D, Ramaraje Urs SU, Sharma A, Mahapatra M, Drepper F, Imhof D, Huesgen PF, Oldenburg J, Geyer M, Biswas A
Blood (2025) 145 pp. 438-449 [ DOI: doi:10.1182/blood.2024025369 Pubmed: 39447073 ]
- Factor xiii a2b2 heterotetramer (Complex from Homo sapiens)
- Water (18 Da, Ligand)
- Coagulation factor xiii a chain (83 kDa, Protein from Homo sapiens)
- Coagulation factor xiii b chain (75 kDa, Protein from Homo sapiens)
Cryo-EM structure of human HSP90B in the closed state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8eob
Q-score: 0.516
Srivastava D, Yadav RP, Singh S, Boyd K, Artemyev NO
Structure (2023) 31 pp. 309- [ Pubmed: 36657440 DOI: doi:10.1016/j.str.2022.12.014 ]
- Magnesium ion (24 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Hsp90b dimer in the closed amppnp bound state (174 kDa, Complex from Homo sapiens)
- Heat shock protein hsp 90-beta (87 kDa, Protein from Homo sapiens)
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7kmk
Q-score: 0.191
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7kml
Q-score: 0.23
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with Fab 15033-7, 3-"up", asymmetric
Resolution: 6.4 Å
EM Method: Single-particle
Fitted PDBs: 7kxj
Q-score: 0.113
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Homo sapiens)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)
SARS-CoV-2 spike protein in complex with Fab 15033-7, 2-"up"-1-"down" conformation
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 7kxk
Q-score: 0.118
Miersch S, Li Z, Saberianfar R, Ustav M, Brett Case J, Blazer L, Chen C, Ye W, Pavlenco A, Gorelik M, Garcia Perez J, Subramania S, Singh S, Ploder L, Ganaie S, Chen RE, Leung DW, Pandolfi PP, Novelli G, Matusali G, Colavita F, Capobianchi MR, Jain S, Gupta JB, Amarasinghe GK, Diamond MS, Rini J, Sidhu SS
J Mol Biol (2021) 433 pp. 167177-167177 [ DOI: doi:10.1016/j.jmb.2021.167177 Pubmed: 34329642 ]
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Fab 15033-7 light chain (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike protein in complex with fab 15033-7 (Complex from Homo sapiens)
- Fab 15033-7 heavy chain (23 kDa, Protein from Homo sapiens)