Fostier CR, Ousalem F, Leroy EC, Ngo S, Soufari H, Innis CA, Hashem Y, Boel G
Nat Commun (2023) 14 pp. 3891-3891 [ DOI: doi:10.1038/s41467-023-39553-8 Pubmed: 37393329 ]
Fostier CR, Ousalem F, Leroy EC, Ngo S, Soufari H, Innis CA, Hashem Y, Boel G
Nat Commun (2023) 14 pp. 3891-3891 [ DOI: doi:10.1038/s41467-023-39553-8 Pubmed: 37393329 ]
Fostier CR, Ousalem F, Leroy EC, Ngo S, Soufari H, Innis CA, Hashem Y, Boel G
Nat Commun (2023) 14 pp. 3891-3891 [ DOI: doi:10.1038/s41467-023-39553-8 Pubmed: 37393329 ]
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7pkq
Q-score: 0.231
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y
To Be Published
- Mitochondrial ribosomal protein s14 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s3_c domain-containing protein (50 kDa, Protein from Chlamydomonas reinhardtii)
- Ms35 (88 kDa, Protein from Chlamydomonas reinhardtii)
- Unk3 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Us19m (12 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s13 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ms105 (28 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_s10 domain-containing protein (61 kDa, Protein from Chlamydomonas reinhardtii)
- Us2m (53 kDa, Protein from Chlamydomonas reinhardtii)
- Bs18m (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ms107 (43 kDa, Protein from Chlamydomonas reinhardtii)
- Ms106 (51 kDa, Protein from Chlamydomonas reinhardtii)
- Us4m (43 kDa, Protein from Chlamydomonas reinhardtii)
- Plastid-specific ribosomal protein 4 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Us11m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Unk4 (6 kDa, Protein from Chlamydomonas reinhardtii)
- S3 rrna (126 kDa, RNA from Chlamydomonas reinhardtii)
- Ms31/46 (15 kDa, Protein from Chlamydomonas reinhardtii)
- Unk5 (9 kDa, Protein from Chlamydomonas reinhardtii)
- Us7m,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein,ribosomal_s7 domain-containing protein (32 kDa, Protein from Chlamydomonas reinhardtii)
- Ms23 (20 kDa, Protein from Chlamydomonas reinhardtii)
- Bs1m (26 kDa, Protein from Chlamydomonas reinhardtii)
- Unk6 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Ms34 (14 kDa, Protein from Chlamydomonas reinhardtii)
- 30s ribosomal protein s9, chloroplastic (45 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- S5 drbm domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- S4 rrna (133 kDa, RNA from Chlamydomonas reinhardtii)
- S1 rrna (32 kDa, RNA from Chlamydomonas reinhardtii)
- Us17m (22 kDa, Protein from Chlamydomonas reinhardtii)
- Us8m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Bs16m (10 kDa, Protein from Chlamydomonas reinhardtii)
- S2 rrna (68 kDa, RNA from Chlamydomonas reinhardtii)
- Ms45 (102 kDa, Protein from Chlamydomonas reinhardtii)
- Ms45-insert (36 kDa, Protein from Chlamydomonas reinhardtii)
- Small subunit of the chlamydomonas reinhardtii mitochondrial ribosome (Complex from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein s6 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Us15m (34 kDa, Protein from Chlamydomonas reinhardtii)
- Unk2 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Ms29 (49 kDa, Protein from Chlamydomonas reinhardtii)
- Ms33 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Us12m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ms26 (22 kDa, Protein from Chlamydomonas reinhardtii)
Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7q4k
Q-score: 0.514
Fostier CR, Ousalem F, Leroy EC, Ngo S, Soufari H, Innis CA, Hashem Y, Boel G
Nat Commun (2023) 14 pp. 3891-3891 [ DOI: doi:10.1038/s41467-023-39553-8 Pubmed: 37393329 ]
- Erythromycin a (733 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- Msrdl: fme-tyr-leu-ile-phe-met (845 Da, Protein from Streptococcus pneumoniae)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli K-12)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 16s rrna (497 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- Erythromycin-stalled escherichia coli 70s ribosome with streptococcal msrdl nascent chain (Complex)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Msrdl mrna (2 kDa, RNA from Streptococcus pneumoniae)
- Phe-trna (e site) (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- Met-trna (p site) (25 kDa, RNA from Escherichia coli)
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pkt
Q-score: 0.486
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
- Bl32m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml43 (16 kDa, Protein from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- Ul29m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ppr* (14 kDa, Protein from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial ribosomal protein l33 (6 kDa, Protein from Chlamydomonas reinhardtii)
- Ml114 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Kow domain-containing protein,ul24m (31 kDa, Protein from Chlamydomonas reinhardtii)
- Bl27m (18 kDa, Protein from Chlamydomonas reinhardtii)
- L4 rrna (38 kDa, RNA from Chlamydomonas reinhardtii)
- Ribosomal_tl5_c domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Ml115 (72 kDa, Protein from Chlamydomonas reinhardtii)
- Ml119 (36 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l30 domain-containing protein (24 kDa, Protein from Chlamydomonas reinhardtii)
- Ml117 (75 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17,bl17m (21 kDa, Protein from Chlamydomonas reinhardtii)
- Bl36m (3 kDa, Protein from Chlamydomonas reinhardtii)
- Ul4m (45 kDa, Protein from Chlamydomonas reinhardtii)
- Ul3m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l18e/l15p domain-containing protein (35 kDa, Protein from Chlamydomonas reinhardtii)
- Ul5m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ul22m (39 kDa, Protein from Chlamydomonas reinhardtii)
- L6 rrna (43 kDa, RNA from Chlamydomonas reinhardtii)
- Bl21m (40 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l9, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l23 (25 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l2_c domain-containing protein (41 kDa, Protein from Chlamydomonas reinhardtii)
- Ml80 (27 kDa, Protein from Chlamydomonas reinhardtii)
- L3b rrna (59 kDa, RNA from Chlamydomonas reinhardtii)
- Unk2 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l13 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Ml41 (12 kDa, Protein from Chlamydomonas reinhardtii)
- L5 rrna (47 kDa, RNA from Chlamydomonas reinhardtii)
- Bl28m (17 kDa, Protein from Chlamydomonas reinhardtii)
- Bl35m (17 kDa, Protein from Chlamydomonas reinhardtii)
- L2a rrna (27 kDa, RNA from Chlamydomonas reinhardtii)
- Plastid ribosomal protein l6 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Chlamydomonas reinhardtii)
- L1 rrna (51 kDa, RNA from Chlamydomonas reinhardtii)
- Magnesium ion (24 Da, Ligand)
- Ml113 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Ml40 (17 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Bl34m (29 kDa, Protein from Chlamydomonas reinhardtii)
- L7 rrna (186 kDa, RNA from Chlamydomonas reinhardtii)
- Ul14m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml59/64 (14 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l20 (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml116 (53 kDa, Protein from Chlamydomonas reinhardtii)
- Ml118 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Large subunit of the mitochondrial ribosome of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- L8 rrna (132 kDa, RNA from Chlamydomonas reinhardtii)
- Ml87 (23 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l16 domain-containing protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Ml63/57/60 (14 kDa, Protein from Chlamydomonas reinhardtii)
- L3a rrna (5s) (24 kDa, RNA from Chlamydomonas reinhardtii)
Small subunit of the Chlamydomonas mitoribosome - head focus
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
C.reinhardtii mitochondrial ribosome (in situ)
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7bgd
Q-score: 0.507
Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y
Front Mol Biosci (2021) 8 pp. 1022- [ ]
- Mrna (10 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- Staphylococcus aureus 30s ribosomal subunit in the presence of spermidine (body only) (Complex)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus)
- Mrna (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7bge
Q-score: 0.432
Belinite M, Khusainov I, Soufari H, Marzi S, Romby P, Yusupov M, Hashem Y
Front Mol Biosci (2021) 8 pp. 1022- [ ]
- Staphylococcus aureus 30s ribosomal subunit in presence of spermidine (head only) (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
- 16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))