mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7aor
Q-score: 0.416
Soufari H, Waltz F, Parrot C, Durrieu-Gaillard S, Bochler A, Kuhn L, Sissler M, Hashem Y
PNAS (2020) 117 pp. 29851-29861 [ DOI: doi:10.1073/pnas.2011301117 Pubmed: 33168716 ]
- Ms56 (47 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms72 (19 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms68 (27 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms60 (34 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Murf5 (10 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Trafficking protein particle complex subunit (28 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us15m (50 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms52 (81 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms62 (31 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms59 (35 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms48 (206 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us11m (37 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms66 (29 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Bs16m (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms51 (95 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms37 (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms38 (26 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Bs21m (23 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Bs6m (19 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Mt-if3 (42 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms61 (32 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Magnesium ion (24 Da, Ligand)
- Ms47 (134 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms53 (76 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms49 (136 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Mt-ssu from trypanosoma cruzi in complex with mt-if-3. (Complex)
- Rna (478-mer) (2 MDa, RNA from Trypanosoma cruzi (strain CL Brener))
- Ribosomal_s5_c domain-containing protein (49 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us19 (19 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms65 (29 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms58 (35 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms29 (57 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Bs18m (37 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms54 (77 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms70 (20 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Akap7_nls domain-containing protein (30 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms26 (51 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Protein fyv4, mitochondrial (22 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us9m (50 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms69 (21 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms55 (67 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Mt-ssu from trypanosoma cruzi in complex with mt-if-3. (Complex from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- Superoxide dismutase, putative (38 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms23 (34 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms73 (24 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms22 (73 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms57 (46 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Sod_fe_c domain-containing protein (49 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Mt-ssu from trypanosoma cruzi in complex with mt-if-3. (Complex from Trypanosoma cruzi (strain CL Brener))
- Ribosome protein s12 (9 kDa, Protein from Trypanosoma cruzi)
- Ms50 (129 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Rhodanese domain-containing protein (30 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms35 (99 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ms33 (20 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us14m (19 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Ms71 (25 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Uridine 5'-triphosphate (484 Da, Ligand)
- Us10m (94 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- Us8m (33 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
- 30s ribosomal protein s17-like protein (35 kDa, Protein from Trypanosoma cruzi)
- Ms63 (34 kDa, Protein from Trypanosoma cruzi (strain CL Brener))
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 7ase
Q-score: 0.314
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- 40s ribosomal protein s15, putative (17 kDa, Protein from Trypanosoma cruzi)
- Csn8_psd8_eif3k domain-containing protein (22 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s33 (10 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s18, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s12 (15 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s9 (22 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 (eif-3) interacting protein, putative (56 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s13, putative (17 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s5, putative (21 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit e (46 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 7-like protein, putative (57 kDa, Protein from Trypanosoma cruzi)
- 60s ribosomal protein l40 (16 kDa, Protein from Trypanosoma cruzi)
- Putative 40s ribosomal protein s21 (27 kDa, Protein from Trypanosoma cruzi)
- Elongation initiation factor 2 alpha subunit, putative (47 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s19, putative (18 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s15a, putative (16 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 3 subunit 8, putative (82 kDa, Protein from Trypanosoma cruzi)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3, putative (24 kDa, Protein from Trypanosoma cruzi)
- Magnesium ion (24 Da, Ligand)
- Protein translation factor sui1 homolog, putative (12 kDa, Protein from Trypanosoma cruzi)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 2 subunit, putative (52 kDa, Protein from Trypanosoma cruzi)
- El41 (4 kDa, Protein from Trypanosoma cruzi)
- Eif3h (38 kDa, Protein from Trypanosoma cruzi)
- Initiator trna-met (24 kDa, RNA from Trypanosoma cruzi)
- 40s ribosomal protein s23, putative (15 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s27, putative (9 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s20, putative (13 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s14, putative (15 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)
- Putative eukaryotic translation initiation factor 1a (18 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s26 (12 kDa, Protein from Trypanosoma cruzi)
- Ribosomal protein s29, putative (6 kDa, Protein from Trypanosoma cruzi)
- Eukaryotic translation initiation factor 5, putative (42 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s3a-2 (29 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s11, putative (20 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s2, putative (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s8 (25 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein sa (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s4 (30 kDa, Protein from Trypanosoma cruzi)
- 18s (746 kDa, RNA from Trypanosoma cruzi)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s30 (7 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s10, putative (18 kDa, Protein from Trypanosoma cruzi)
- Eif3a (87 kDa, Protein from Trypanosoma cruzi)
- Translation initiation factor, putative (38 kDa, Protein from Trypanosoma cruzi)
- Jab_mpn domain-containing protein (38 kDa, Protein from Trypanosoma cruzi)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Trypanosoma cruzi)
- Rna-binding protein, putative (27 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s25 (12 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s6 (28 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s17, putative (16 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s7 (24 kDa, Protein from Trypanosoma cruzi)
- 40s ribosomal protein s16, putative (16 kDa, Protein from Trypanosoma cruzi)
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7ask
Q-score: 0.272
Bochler A, Querido JB, Prilepskaja T, Soufari H, Simonetti A, Del Cistia ML, Kuhn L, Ribeiro AR, Valasek LS, Hashem Y
Cell Rep (2020) 33 pp. 108534-108534 [ Pubmed: 33357443 DOI: doi:10.1016/j.celrep.2020.108534 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Kddx60 (246 kDa, Protein from Trypanosoma cruzi)
- 43s preinitiation complex from trypanosoma cruzi with the helicase kddx60 (Complex from Trypanosoma cruzi)