Resolution: 1.78 Å
EM Method: Single-particle
Fitted PDBs: 8qyx
Q-score: 0.703
Wiechert F, Unbehaun A, Sprink T, Seibel H, Burger J, Loerke J, Mielke T, Diebolder CA, Schacherl M, Spahn CMT
Nucleic Acids Res (2025) 53 [ DOI: doi:10.1093/nar/gkae1191 Pubmed: 39658079 ]
- 60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- 60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein el40 (14 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul2 (28 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
- 28s rrna (1 MDa, RNA from Homo sapiens)
- 60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
- Spermine (202 Da, Ligand)
- 60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Large ribosomal subunit protein ul30 (29 kDa, Protein from Homo sapiens)
- 1,4-diaminobutane (88 Da, Ligand)
- Large ribosomal subunit protein ul15 (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
- Large ribosomal subunit protein ul3 (46 kDa, Protein from Homo sapiens)
- Human mature large ribosomal subunit (Complex from Homo sapiens)
- 60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
- 5s rrna (38 kDa, RNA from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
- Ribosomal protein ul16-like (24 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
- 5.8s rrna (50 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
Cryo-electron tomography structure of membrane-bound EHD4 complex
Resolution: 7.6 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7sox
Q-score: 0.086
Melo AA, Sprink T, Noel JK, Vazquez-Sarandeses E, van Hoorn C, Mohd S, Loerke J, Spahn CMT, Daumke O
Nat Commun (2022) 13 pp. 7641-7641 [ DOI: doi:10.1038/s41467-022-35164-x Pubmed: 36496453 ]
- Eh domain-containing protein 4 (58 kDa, Protein from Mus musculus)
- Ehd4 with amppnp and liposomes (590 kDa, Cellular component from Mus musculus)
Cryo-electron microscopy structure of ribosome-bound initiation factor 2
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 3jcn
Q-score: 0.241
Sprink T, Ramrath DJF, Yamamoto H, Yamamoto K, Loerke J, Ismer J, Hildebrand PW, Scheerer P, Buerger J, Mielke T, Spahn CMT
Sci Adv (2016)
- Initiation factor 2 (97 kDa, Protein from Escherichia coli)
- 70s ribosome (2 MDa, Complex from Escherichia coli)
- Fmet-trnaimet (RNA from Escherichia coli)
- Initiation factor 2 was stalled on escherichia coli 70s ribosomes by the non-hydrolysable gtp analogue gdpnp in the presence of fmet-trnaimet and mrna. (2 MDa, Sample)
Cryo-electron microscopy structure of ribosome-bound initiation factor 2 70S IC II state
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 3jcj
Q-score: 0.35
Sprink T, Ramrath DJF, Yamamoto H, Yamamoto K, Loerke J, Ismer J, Hildebrand PW, Scheerer P, Buerger J, Mielke T, Spahn CMT
Sci Adv (2016) 2 pp. e1501502-e1501502
- Initiation factor 2 (97 kDa, Protein from Escherichia coli)
- 70s ribosome (2 MDa, Complex from Escherichia coli)
- Fmet-trnaimet (RNA from Escherichia coli)
- Escherichia coli initiation factor 2 stalled on escherichia coli 70s ribosomes by the non-hydrolysable gtp analogue gdpnp in the presence of fmet-trnaimet and mrna (2 MDa, Sample)
Cryo-EM reconstruction of a authentic 70S-tRNA2-mRNA-EF-G translocation intermediate
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 4v7b
Q-score: 0.161
Ramrath DJ, Lancaster L, Sprink T, Mielke T, Loerke J, Noller HF, Spahn CM
PNAS (2013) 110 pp. 20964-20969 [ Pubmed: 24324168 DOI: doi:10.1073/pnas.1320387110 ]
- Elongation factor g (Protein from Escherichia coli)
- Modified formyl-methionine specific initiator transfer rna (RNA from Escherichia coli)
- Formyl-methionine specific initiator transfer rna (RNA from Escherichia coli)
- Ribosomal 70s-ef-g complex at an authentic intermediate state during translocation (3 MDa, Sample)
- Messenger rna (RNA from Escherichia coli)
- 70s ribosome (3 MDa, Complex from Escherichia coli)