Cryo-EM structure of the inhibitor-bound Vo complex from Enterococcus hirae
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8wci
Q-score: 0.725
Suzuki K, Goto Y, Otomo A, Shimizu K, Abe S, Moriyama K, Yasuda S, Hashimoto Y, Kurushima J, Mikuriya S, Imai FL, Adachi N, Kawasaki M, Sato Y, Ogasawara S, Iwata I, Senda T, Ikeguchi M, Tomita H, Iino R, Moriya T, Murata T
To Be Published
- Cardiolipin (1 kDa, Ligand)
- Water (18 Da, Ligand)
- V-type sodium atpase subunit i (76 kDa, Protein from Enterococcus hirae ATCC 9790)
- N,n-dimethyl-4-(5-methyl-1h-benzimidazol-2-yl)aniline (251 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- V-type sodium atpase subunit k (16 kDa, Protein from Enterococcus hirae ATCC 9790)
- V-atpase (735 kDa, Complex from Enterococcus hirae ATCC 9790)
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in LMNG detergent
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8y6h
Q-score: 0.608
Hamaguchi-Suzuki N, Adachi N, Moriya T, Yasuda S, Kawasaki M, Suzuki K, Ogasawara S, Anzai N, Senda T, Murata T
Biochem Biophys Res Commun (2024) 709 pp. 149855-149855 [ DOI: doi:10.1016/j.bbrc.2024.149855 Pubmed: 38579618 ]
- Uic2 fab heavy chain (24 kDa, Protein from Mus musculus)
- Elacridar (563 Da, Ligand)
- Multidrug resistance protein (Complex from Homo sapiens)
- Atp-dependent translocase abcb1,mneongreen (170 kDa, Protein from Homo sapiens)
- Uic2 fab light chain (24 kDa, Protein from Mus musculus)
P-glycoprotein in complex with UIC2 Fab and triple elacridar molecules in nanodisc
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8y6i
Q-score: 0.576
Hamaguchi-Suzuki N, Adachi N, Moriya T, Yasuda S, Kawasaki M, Suzuki K, Ogasawara S, Anzai N, Senda T, Murata T
Biochem Biophys Res Commun (2024) 709 pp. 149855-149855 [ DOI: doi:10.1016/j.bbrc.2024.149855 Pubmed: 38579618 ]
- Uic2 fab heavy chain (24 kDa, Protein from Mus musculus)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Elacridar (563 Da, Ligand)
- Multidrug resistance protein (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Atp-dependent translocase abcb1,mneongreen (170 kDa, Protein from Homo sapiens)
- Uic2 fab light chain (24 kDa, Protein from Mus musculus)
Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y
To Be Published
- Neutralizing antibody csw1-1805 heavy chain (Protein from Mus musculus)
- Spike protein (Complex from Mus musculus)
- Neutralizing antibody csw1-1805 light chain (Protein from Mus musculus)
- Antibody (Complex)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
- Cryo-em structure of the sars-cov-2 spike protein (3-up rbd) bound to neutralizing antibody csw1-1805 (Complex from Severe acute respiratory syndrome coronavirus 2)
Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y
To Be Published
- Cryo-em structure of the sars-cov-2 spike protein (1-up rbd) bound to neutralizing antibody csw2-1353 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody csw2-1353 heavy chain (Protein from Mus musculus)
- Spike protein (Complex from Mus musculus)
- Neutralizing antibody csw2-1353 light chain (Protein from Mus musculus)
- Antibody (Complex)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
Anzai I, Fujita J, Ono C, Kosaka Y, Miyamoto Y, Shichinohe S, Takada K, Torii S, Taguwa S, Suzuki K, Makino F, Kajita T, Inoue T, Namba K, Watanabe T, Matsuura Y
To Be Published
- Neutralizing antibody csw2-1353 heavy chain (Protein from Mus musculus)
- Spike protein (Complex from Mus musculus)
- Cryo-em structure of the sars-cov-2 spike protein (2-up rbd) bound to neutralizing antibody csw2-1353 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Neutralizing antibody csw2-1353 light chain (Protein from Mus musculus)
- Antibody (Complex)
- Spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7y6l
Q-score: 0.492
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab816 (560 kDa, Complex from Homo sapiens)
- Ab816 light chain (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Ab816 heavy chain (28 kDa, Protein from Homo sapiens)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y6n
Q-score: 0.288
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab803 (560 kDa, Complex from Homo sapiens)
- Ab803 heavy chain (28 kDa, Protein from Homo sapiens)
- Ab803 light chain (26 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7x93
Q-score: 0.486
Takeshita M, Fukuyama H, Kamada K, Matsumoto T, Makino-Okamura C, Lin Q, Sakuma M, Kawahara E, Yamazaki I, Uchikubo-Kamo T, Tomabechi Y, Hanada K, Hisano T, Moriyama S, Takahashi Y, Ito M, Imai M, Maemura T, Furusawa Y, Yamayoshi S, Kawaoka Y, Shirouzu M, Ishii M, Saya H, Kondo Y, Kaneko Y, Suzuki K, Fukunaga K, Takeuchi T
iScience (2023) 26 pp. 106955-106955 [ DOI: doi:10.1016/j.isci.2023.106955 Pubmed: 37288342 ]
- Ab765 light chain (25 kDa, Protein from Homo sapiens)
- Ab765 heavy chain (28 kDa, Protein from Homo sapiens)
- The sars-cov-2 spike protein bound with the fab fragment of a human neutralizing antibody ab354 (560 kDa, Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)