Cryo-EM structure of Human SHMT1
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8r7h
Q-score: 0.439
Spizzichino S, Di Fonzo F, Marabelli C, Tramonti A, Chaves-Sanjuan A, Parroni A, Boumis G, Liberati FR, Paone A, Montemiglio LC, Ardini M, Jakobi AJ, Bharadwaj A, Swuec P, Tartaglia GG, Paiardini A, Contestabile R, Mai A, Rotili D, Fiorentino F, Macone A, Giorgi A, Tria G, Rinaldo S, Bolognesi M, Giardina G, Cutruzzola F
Mol Cell (2024) 84 pp. 2682- [ DOI: doi:10.1016/j.molcel.2024.06.016 Pubmed: 38996576 ]
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
- Human shmt1 (210 kDa, Complex from Homo sapiens)
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 7zla
Q-score: 0.365
Freda I, Exertier C, Barile A, Chaves-Sanjuan A, Vega MV, Isupov MN, Harmer NJ, Gugole E, Swuec P, Bolognesi M, Scipioni A, Savino C, Di Salvo ML, Contestabile R, Vallone B, Tramonti A, Montemiglio LC
Nucleic Acids Res (2023) 51 pp. 8237-8254 [ DOI: doi:10.1093/nar/gkad552 Pubmed: 37378428 ]
- Binary complex between the plp-bound homodimeric pdxr and a 48bp double strand dna fragment (136 kDa, Complex from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Plp-dependent aminotransferase family protein (55 kDa, Protein from Alkalihalobacillus clausii)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7zn5
Q-score: 0.418
Freda I, Exertier C, Barile A, Chaves-Sanjuan A, Vega MV, Isupov MN, Harmer NJ, Gugole E, Swuec P, Bolognesi M, Scipioni A, Savino C, Di Salvo ML, Contestabile R, Vallone B, Tramonti A, Montemiglio LC
Nucleic Acids Res (2023) 51 pp. 8237-8254 [ DOI: doi:10.1093/nar/gkad552 Pubmed: 37378428 ]
- Binary complex between the plp-bound homodimeric pdxr and a 48bp double strand dna fragment (136 kDa, Complex from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Plp-dependent aminotransferase family protein (55 kDa, Protein from Alkalihalobacillus clausii)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7zpa
Q-score: 0.412
Freda I, Exertier C, Barile A, Chaves-Sanjuan A, Vega MV, Isupov MN, Harmer NJ, Gugole E, Swuec P, Bolognesi M, Scipioni A, Savino C, Di Salvo ML, Contestabile R, Vallone B, Tramonti A, Montemiglio LC
Nucleic Acids Res (2023) 51 pp. 8237-8254 [ DOI: doi:10.1093/nar/gkad552 Pubmed: 37378428 ]
- Binary complex between the plp-bound homodimeric pdxr and a 48bp double strand dna fragment (136 kDa, Complex from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Plp-dependent aminotransferase family protein (55 kDa, Protein from Alkalihalobacillus clausii)
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7zth
Q-score: 0.413
Freda I, Exertier C, Barile A, Chaves-Sanjuan A, Vega MV, Isupov MN, Harmer NJ, Gugole E, Swuec P, Bolognesi M, Scipioni A, Savino C, Di Salvo ML, Contestabile R, Vallone B, Tramonti A, Montemiglio LC
Nucleic Acids Res (2023) 51 pp. 8237-8254 [ DOI: doi:10.1093/nar/gkad552 Pubmed: 37378428 ]
- Binary complex between the plp-bound homodimeric pdxr and a 48bp double strand dna fragment (136 kDa, Complex)
- Plp-dependent aminotransferase family protein (Complex from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Dna (48-mer) (14 kDa, DNA from Alkalihalobacillus clausii)
- Plp-dependent aminotransferase family protein (55 kDa, Protein from Alkalihalobacillus clausii)
- Dna (Complex from Alkalihalobacillus clausii)
Cryo-EM structure of the Human SHMT1-RNA complex
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8a11
Q-score: 0.395
Spizzichino S, Di Fonzo F, Marabelli C, Tramonti A, Chaves-Sanjuan A, Parroni A, Boumis G, Liberati FR, Paone A, Montemiglio LC, Ardini M, Jakobi AJ, Bharadwaj A, Swuec P, Tartaglia GG, Paiardini A, Contestabile R, Mai A, Rotili D, Fiorentino F, Macone A, Giorgi A, Tria G, Rinaldo S, Bolognesi M, Giardina G, Cutruzzola F
Mol Cell (2024) [ DOI: doi:10.1016/j.molcel.2024.06.016 Pubmed: 38996576 ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
- Human shmt1 in complex with rna (shmt2 5' utr 1-50) (53 MDa, Complex from Homo sapiens)