Cryo-EM structure of Human SHMT1
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8r7h
Q-score: 0.439
Spizzichino S, Di Fonzo F, Marabelli C, Tramonti A, Chaves-Sanjuan A, Parroni A, Boumis G, Liberati FR, Paone A, Montemiglio LC, Ardini M, Jakobi AJ, Bharadwaj A, Swuec P, Tartaglia GG, Paiardini A, Contestabile R, Mai A, Rotili D, Fiorentino F, Macone A, Giorgi A, Tria G, Rinaldo S, Bolognesi M, Giardina G, Cutruzzola F
Mol Cell (2024) 84 pp. 2682- [ DOI: doi:10.1016/j.molcel.2024.06.016 Pubmed: 38996576 ]
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
- Human shmt1 (210 kDa, Complex from Homo sapiens)
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
Cryo-EM structure of the Human SHMT1-RNA complex
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8a11
Q-score: 0.395
Spizzichino S, Di Fonzo F, Marabelli C, Tramonti A, Chaves-Sanjuan A, Parroni A, Boumis G, Liberati FR, Paone A, Montemiglio LC, Ardini M, Jakobi AJ, Bharadwaj A, Swuec P, Tartaglia GG, Paiardini A, Contestabile R, Mai A, Rotili D, Fiorentino F, Macone A, Giorgi A, Tria G, Rinaldo S, Bolognesi M, Giardina G, Cutruzzola F
Mol Cell (2024) [ DOI: doi:10.1016/j.molcel.2024.06.016 Pubmed: 38996576 ]
- Pyridoxal-5'-phosphate (247 Da, Ligand)
- Serine hydroxymethyltransferase, cytosolic (53 kDa, Protein from Homo sapiens)
- Human shmt1 in complex with rna (shmt2 5' utr 1-50) (53 MDa, Complex from Homo sapiens)
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 7q53
Q-score: 0.228
Marotta R, Del Giudice A, Gurrieri L, Fanti S, Swuec P, Galantini L, Falini G, Trost P, Fermani S, Sparla F
Acta Crystallogr D Struct Biol (2022) 78 pp. 1399-1411 [ Pubmed: 36322422 DOI: doi:10.1107/S2059798322010014 ]
- Photosynthetic a2b2 glyceraldehyde-3-phosphate dehydrogenase hetero-tetramer complexed with nad. (Complex from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase b, chloroplastic (36 kDa, Protein from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic (36 kDa, Protein from Spinacia oleracea)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 8.9 Å
EM Method: Single-particle
Fitted PDBs: 7q54
Q-score: 0.135
Marotta R, Del Giudice A, Gurrieri L, Fanti S, Swuec P, Galantini L, Falini G, Trost P, Fermani S, Sparla F
Acta Crystallogr D Struct Biol (2022) 78 pp. 1399-1411 [ Pubmed: 36322422 DOI: doi:10.1107/S2059798322010014 ]
- Photosynthetic a4b4 glyceraldehyde-3-phosphate dehydrogenase hetero-octamer complexed with nad. (Complex from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic (43 kDa, Protein from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase b, chloroplastic (48 kDa, Protein from Spinacia oleracea)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 5.7 Å
EM Method: Single-particle
Fitted PDBs: 7q55
Q-score: 0.262
Marotta R, Del Giudice A, Gurrieri L, Fanti S, Swuec P, Galantini L, Falini G, Trost P, Fermani S, Sparla F
Acta Crystallogr D Struct Biol (2022) 78 pp. 1399-1411 [ Pubmed: 36322422 DOI: doi:10.1107/S2059798322010014 ]
- A8b8 photosynthetic glyceraldehyde 3-phosphate dehydrogenase hetero-hexdecamer (major conformer) complexed with nad. (Complex from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic (43 kDa, Protein from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase b, chloroplastic (48 kDa, Protein from Spinacia oleracea)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 7q56
Q-score: 0.231
Marotta R, Del Giudice A, Gurrieri L, Fanti S, Swuec P, Galantini L, Falini G, Trost P, Fermani S, Sparla F
Acta Crystallogr D Struct Biol (2022) 78 pp. 1399-1411 [ Pubmed: 36322422 DOI: doi:10.1107/S2059798322010014 ]
- A8b8 glyceraldehyde-3-phospahte dehydrogenase hetero-hexdecamer (minor conformer)complexed with nad. (Complex from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic (36 kDa, Protein from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase b, chloroplastic (39 kDa, Protein from Spinacia oleracea)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
Resolution: 13.0 Å
EM Method: Single-particle
Fitted PDBs: 7q57
Q-score: 0.069
Marotta R, Del Giudice A, Gurrieri L, Fanti S, Swuec P, Galantini L, Falini G, Trost P, Fermani S, Sparla F
Acta Crystallogr D Struct Biol (2022) 78 pp. 1399-1411 [ Pubmed: 36322422 DOI: doi:10.1107/S2059798322010014 ]
- A10b10 glyceraldehyde-3-phospahte dehydrogenase hetero-icosamer complexed with nad. (Complex from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic,glyceraldehyde-3-phosphate dehydrogenase a, chloroplastic (36 kDa, Protein from Spinacia oleracea)
- Glyceraldehyde-3-phosphate dehydrogenase b, chloroplastic (48 kDa, Protein from Spinacia oleracea)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
MVV cleaved synaptic complex (CSC) intasome at 4.5 A resolution (re-refined)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7zpp
Q-score: 0.097
Ballandras-Colas A, Maskell DP, Serrao E, Locke J, Swuec P, Jonsson SR, Kotecha A, Cook NJ, Pye VE, Taylor IA, Andresdottir V, Engelman AN, Costa A, Cherepanov P
Science (2017) 355 pp. 93-95 [ Pubmed: 28059770 DOI: doi:10.1126/science.aah7002 ]
- Intergrase (Complex from Visna/maedi virus EV1 KV1772)
- Vdna, non-transferred strand (6 kDa, DNA from Visna lentivirus (strain 1514))
- Vdna, transferred strand (5 kDa, DNA from Visna-maedi virus)
- Maedi-visna virus (mvv) intasome (542 kDa, Complex)
- Vdna (Complex from Visna-maedi virus)
- Integrase (32 kDa, Protein from Visna/maedi virus EV1 KV1772)
cAMP-free rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7np3
Q-score: 0.419
Saponaro A, Bauer D, Giese MH, Swuec P, Porro A, Gasparri F, Sharifzadeh AS, Chaves-Sanjuan A, Alberio L, Parisi G, Cerutti G, Clarke OB, Hamacher K, Colecraft HM, Mancia F, Hendrickson WA, Siegelbaum SA, DiFrancesco D, Bolognesi M, Thiel G, Santoro B, Moroni A
Mol Cell (2021) 81 pp. 2929-2943.e6 [ DOI: doi:10.1016/j.molcel.2021.05.033 Pubmed: 34166608 ]
cAMP-bound rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7np4
Q-score: 0.451
Saponaro A, Bauer D, Giese MH, Swuec P, Porro A, Gasparri F, Sharifzadeh AS, Chaves-Sanjuan A, Alberio L, Parisi G, Cerutti G, Clarke OB, Hamacher K, Colecraft HM, Mancia F, Hendrickson WA, Siegelbaum SA, DiFrancesco D, Bolognesi M, Thiel G, Santoro B, Moroni A
Mol Cell (2021) 81 pp. 2929-2943.e6 [ DOI: doi:10.1016/j.molcel.2021.05.033 Pubmed: 34166608 ]