SARS-CoV-2 EG.5.1 spike glycoprotein (closed-2 state)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8wmd
Q-score: 0.484
Tsujino S, Deguchi S, Nomai T, Padilla-Blanco M, Plianchaisuk A, Wang L, Begum MM, Uriu K, Mizuma K, Nao N, Kojima I, Tsubo T, Li J, Matsumura Y, Nagao M, Oda Y, Tsuda M, Anraku Y, Kita S, Yajima H, Sasaki-Tabata K, Guo Z, Hinay Jr AA, Yoshimatsu K, Yamamoto Y, Nagamoto T, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Nasser H, Jonathan M, Putri O, Kim Y, Chen L, Suzuki R, Tamura T, Maenaka K, Irie T, Matsuno K, Tanaka S, Ito J, Ikeda T, Takayama K, Zahradnik J, Hashiguchi T, Fukuhara T, Sato K
Microbiol Immunol (2024) 68 pp. 305-330 [ Pubmed: 38961765 DOI: doi:10.1111/1348-0421.13165 ]
SARS-CoV-2 EG.5.1 spike glycoprotein (closed-1 state)
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8wmf
Q-score: 0.571
Tsujino S, Deguchi S, Nomai T, Padilla-Blanco M, Plianchaisuk A, Wang L, Begum MM, Uriu K, Mizuma K, Nao N, Kojima I, Tsubo T, Li J, Matsumura Y, Nagao M, Oda Y, Tsuda M, Anraku Y, Kita S, Yajima H, Sasaki-Tabata K, Guo Z, Hinay Jr AA, Yoshimatsu K, Yamamoto Y, Nagamoto T, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Nasser H, Jonathan M, Putri O, Kim Y, Chen L, Suzuki R, Tamura T, Maenaka K, Irie T, Matsuno K, Tanaka S, Ito J, Ikeda T, Takayama K, Zahradnik J, Hashiguchi T, Fukuhara T, Sato K
Microbiol Immunol (2024) 68 pp. 305-330 [ Pubmed: 38961765 DOI: doi:10.1111/1348-0421.13165 ]
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1)
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8jyk
Q-score: 0.567
Tamura T, Irie T, Deguchi S, Yajima H, Tsuda M, Nasser H, Mizuma K, Plianchaisuk A, Suzuki S, Uriu K, Begum MM, Shimizu R, Jonathan M, Suzuki R, Kondo T, Ito H, Kamiyama A, Yoshimatsu K, Shofa M, Hashimoto R, Anraku Y, Kimura KT, Kita S, Sasaki J, Sasaki-Tabata K, Maenaka K, Nao N, Wang L, Oda Y, Ikeda T, Saito A, Matsuno K, Ito J, Tanaka S, Sato K, Hashiguchi T, Takayama K, Fukuhara T
Nat Commun (2024) 15 pp. 1176-1176 [ Pubmed: 38332154 DOI: doi:10.1038/s41467-024-45274-3 ]
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 2)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 8jym
Q-score: 0.505
Tamura T, Irie T, Deguchi S, Yajima H, Tsuda M, Nasser H, Mizuma K, Plianchaisuk A, Suzuki S, Uriu K, Begum MM, Shimizu R, Jonathan M, Suzuki R, Kondo T, Ito H, Kamiyama A, Yoshimatsu K, Shofa M, Hashimoto R, Anraku Y, Kimura KT, Kita S, Sasaki J, Sasaki-Tabata K, Maenaka K, Nao N, Wang L, Oda Y, Ikeda T, Saito A, Matsuno K, Ito J, Tanaka S, Sato K, Hashiguchi T, Takayama K, Fukuhara T
Nat Commun (2024) 15 pp. 1176-1176 [ Pubmed: 38332154 DOI: doi:10.1038/s41467-024-45274-3 ]
SARS-CoV-2 XBB.1 spike glycoprotein (closed-1 state)
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 8ios
Q-score: 0.579
Tamura T, Ito J, Uriu K, Zahradnik J, Kida I, Anraku Y, Nasser H, Shofa M, Oda Y, Lytras S, Nao N, Itakura Y, Deguchi S, Suzuki R, Wang L, Begum MM, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Shimizu R, Tsuda M, Kosugi Y, Fujita S, Pan L, Sauter D, Yoshimatsu K, Suzuki S, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Yamamoto Y, Nagamoto T, Schreiber G, Maenaka K, Hashiguchi T, Ikeda T, Fukuhara T, Saito A, Tanaka S, Matsuno K, Takayama K, Sato K
Nat Commun (2023) 14 pp. 2800-2800 [ DOI: doi:10.1038/s41467-023-38435-3 Pubmed: 37193706 ]
SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state)
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8iot
Q-score: 0.506
Tamura T, Ito J, Uriu K, Zahradnik J, Kida I, Anraku Y, Nasser H, Shofa M, Oda Y, Lytras S, Nao N, Itakura Y, Deguchi S, Suzuki R, Wang L, Begum MM, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Shimizu R, Tsuda M, Kosugi Y, Fujita S, Pan L, Sauter D, Yoshimatsu K, Suzuki S, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Yamamoto Y, Nagamoto T, Schreiber G, Maenaka K, Hashiguchi T, Ikeda T, Fukuhara T, Saito A, Tanaka S, Matsuno K, Takayama K, Sato K
Nat Commun (2023) 14 pp. 2800-2800 [ DOI: doi:10.1038/s41467-023-38435-3 Pubmed: 37193706 ]
SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (2-up state)
Tamura T, Ito J, Uriu K, Zahradnik J, Kida I, Anraku Y, Nasser H, Shofa M, Oda Y, Lytras S, Nao N, Itakura Y, Deguchi S, Suzuki R, Wang L, Begum MM, Kita S, Yajima H, Sasaki J, Sasaki-Tabata K, Shimizu R, Tsuda M, Kosugi Y, Fujita S, Pan L, Sauter D, Yoshimatsu K, Suzuki S, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Yamamoto Y, Nagamoto T, Schreiber G, Maenaka K, Hashiguchi T, Ikeda T, Fukuhara T, Saito A, Tanaka S, Matsuno K, Takayama K, Sato K
Nat Commun (2023) 14 pp. 2800-2800 [ DOI: doi:10.1038/s41467-023-38435-3 Pubmed: 37193706 ]
- Sars-cov-2 xbb.1 spike glycoprotein (420 kDa, Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1 spike glycoprotein (Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1 spike glycoprotein in complex with ace2 (600 kDa, Complex)
- Angiotensin-converting enzyme 2 (Protein from Homo sapiens)
- Angiotensin-converting enzyme 2 (90 kDa, Complex from Homo sapiens)
SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1)
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8gs6
Q-score: 0.531
Saito A, Tamura T, Zahradnik J, Deguchi S, Tabata K, Anraku Y, Kimura I, Ito J, Yamasoba D, Nasser H, Toyoda M, Nagata K, Uriu K, Kosugi Y, Fujita S, Shofa M, Monira Begum M, Shimizu R, Oda Y, Suzuki R, Ito H, Nao N, Wang L, Tsuda M, Yoshimatsu K, Kuramochi J, Kita S, Sasaki-Tabata K, Fukuhara H, Maenaka K, Yamamoto Y, Nagamoto T, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Ueno T, Schreiber G, Takaori-Kondo A, Shirakawa K, Sawa H, Irie T, Hashiguchi T, Takayama K, Matsuno K, Tanaka S, Ikeda T, Fukuhara T, Sato K
Cell Host Microbe (2022) 30 pp. 1540-1555.e15 [ Pubmed: 36272413 DOI: doi:10.1016/j.chom.2022.10.003 ]
SARS-CoV-2 BA.2.75 spike glycoprotein (1-up state)
Saito A, Tamura T, Zahradnik J, Deguchi S, Tabata K, Anraku Y, Kimura I, Ito J, Yamasoba D, Nasser H, Toyoda M, Nagata K, Uriu K, Kosugi Y, Fujita S, Shofa M, Monira Begum M, Shimizu R, Oda Y, Suzuki R, Ito H, Nao N, Wang L, Tsuda M, Yoshimatsu K, Kuramochi J, Kita S, Sasaki-Tabata K, Fukuhara H, Maenaka K, Yamamoto Y, Nagamoto T, Asakura H, Nagashima M, Sadamasu K, Yoshimura K, Ueno T, Schreiber G, Takaori-Kondo A, Shirakawa K, Sawa H, Irie T, Hashiguchi T, Takayama K, Matsuno K, Tanaka S, Ikeda T, Fukuhara T, Sato K
Cell Host Microbe (2022) 30 pp. 1540-1555.e15 [ Pubmed: 36272413 DOI: doi:10.1016/j.chom.2022.10.003 ]