Cryo-EM structure of the Omicron S in complex with 35B5 Fab(1 down-, 1 up- and 1 invisible RBDs)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 7wlz
Q-score: 0.395
Wang X, Chen X, Tan J, Yue S, Zhou R, Xu Y, Lin Y, Yang Y, Zhou Y, Deng K, Chen Z, Ye L, Zhu Y
Cell Host Microbe (2022) 30 pp. 887- [ Pubmed: 35436443 DOI: doi:10.1016/j.chom.2022.03.035 ]
- Heavy chain of 35b5 fab (25 kDa, Protein from Homo sapiens)
- Complex of sars-cov-2 spike glycoprotein and 35b5 fab (Complex from Severe acute respiratory syndrome coronavirus 2)
- Light chain of 35b5 fab (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Homo sapiens)
- 35b5 fab (Complex)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Structure of human 1G05 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6v4n
Q-score: 0.594
Madsen A, Dai YN, McMahon M, Schmitz AJ, Turner JS, Tan J, Lei T, Alsoussi WB, Strohmeier S, Amor M, Mohammed BM, Mudd PA, Simon V, Cox RJ, Fremont DH, Krammer F, Ellebedy AH
Immunity (2020) 53 pp. 852- [ Pubmed: 32976769 DOI: doi:10.1016/j.immuni.2020.08.015 ]
- Water (18 Da, Ligand)
- Influenza virus neuraminidase (Complex from Influenza B virus)
- Structure of human 1g05 fab in complex with influenza virus neuraminidase from b/phuket/3073/2013 (400 kDa, Complex)
- Antibody fab light chain (23 kDa, Protein from Homo sapiens)
- Beta-d-mannopyranose (180 Da, Ligand)
- Neuraminidase (50 kDa, Protein from Influenza B virus)
- Calcium ion (40 Da, Ligand)
- Antibody fab heavy chain (26 kDa, Protein from Homo sapiens)
- Human antibody (Complex from Homo sapiens)
Structure of human 2E01 Fab in complex with influenza virus neuraminidase from B/Phuket/3073/2013
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6v4o
Q-score: 0.525
Madsen A, Dai YN, McMahon M, Schmitz AJ, Turner JS, Tan J, Lei T, Alsoussi WB, Strohmeier S, Amor M, Mohammed BM, Mudd PA, Simon V, Cox RJ, Fremont DH, Krammer F, Ellebedy AH
Immunity (2020) 53 pp. 852- [ Pubmed: 32976769 DOI: doi:10.1016/j.immuni.2020.08.015 ]
- Antibody fab light chain (23 kDa, Protein from Homo sapiens)
- Influenza virus neuraminidase (Complex from Influenza B virus)
- Structure of human 2e01 fab in complex with influenza virus neuraminidase from b/phuket/3073/2013 (400 kDa, Complex)
- Beta-d-mannopyranose (180 Da, Ligand)
- Neuraminidase (50 kDa, Protein from Influenza B virus)
- Antibody fab heavy chain (26 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Human antibody (Complex from Homo sapiens)
cryo-EM structure of archaeal Ribonuclease P with mature tRNA
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6k0b
Q-score: 0.221
Wan F, Wang Q, Tan J, Tan M, Chen J, Shi S, Lan P, Wu J, Lei M
Nat Commun (2019) 10 pp. 2617-2617 [ DOI: doi:10.1038/s41467-019-10496-3 Pubmed: 31197137 ]
- Rpr (83 kDa, RNA from Methanocaldococcus jannaschii)
- Ribonuclease p protein component 2 (15 kDa, Protein from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
- Cryo-em structure of archaeal ribonuclease p with mature trna (Complex from Methanocaldococcus jannaschii)
- Ribonuclease p protein component 4 (15 kDa, Protein from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
- Ribonuclease p protein component 1 (10 kDa, Protein from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
- 50s ribosomal protein l7ae (12 kDa, Protein from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
- Zinc ion (65 Da, Ligand)
- Ribonuclease p protein component 3 (27 kDa, Protein from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440))
- Trna (26 kDa, RNA from Escherichia coli)